Gene : Sobic.005G011400 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR13073:SF0 - BIOGENESIS OF LYSOSOME-RELATED ORGANELLES COMPLEX 1 SUBUNIT 1 Genomic Order:  108
Name:  ? Sobic.005G011400 Secondary Identifier:  ? PAC:37924683
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.005G011400 0.5kb upstream 0.5kb upstream 1268 true Chr05: 1024582-1025849 Sorghum bicolor
Sobic.005G011400 0.5kb upstream 0.5kb upstream 500 false Chr05: 1024582-1025081 Sorghum bicolor
Sobic.005G011400 0.5kb downstream 0.5kb downstream 1268 true Chr05: 1025082-1026349 Sorghum bicolor
Sobic.005G011400 0.5kb downstream 0.5kb downstream 500 false Chr05: 1025850-1026349 Sorghum bicolor
Sobic.005G011400 1.0kb upstream 1.0kb upstream 1768 true Chr05: 1024082-1025849 Sorghum bicolor
Sobic.005G011400 1.0kb upstream 1.0kb upstream 1000 false Chr05: 1024082-1025081 Sorghum bicolor
Sobic.005G011400 1.0kb downstream 1.0kb downstream 1768 true Chr05: 1025082-1026849 Sorghum bicolor
Sobic.005G011400 1.0kb downstream 1.0kb downstream 1000 false Chr05: 1025850-1026849 Sorghum bicolor
Sobic.005G011400 2.0kb upstream 2.0kb upstream 2768 true Chr05: 1023082-1025849 Sorghum bicolor
Sobic.005G011400 2.0kb upstream 2.0kb upstream 2000 false Chr05: 1023082-1025081 Sorghum bicolor
Sobic.005G011400 2.0kb downstream 2.0kb downstream 2768 true Chr05: 1025082-1027849 Sorghum bicolor
Sobic.005G011400 2.0kb downstream 2.0kb downstream 2000 false Chr05: 1025850-1027849 Sorghum bicolor
Sobic.005G011400 5.0kb upstream 5.0kb upstream 5768 true Chr05: 1020082-1025849 Sorghum bicolor
Sobic.005G011400 5.0kb upstream 5.0kb upstream 5000 false Chr05: 1020082-1025081 Sorghum bicolor
Sobic.005G011400 5.0kb downstream 5.0kb downstream 5768 true Chr05: 1025082-1030849 Sorghum bicolor
Sobic.005G011400 5.0kb downstream 5.0kb downstream 5000 false Chr05: 1025850-1030849 Sorghum bicolor
Sobic.005G011400 10.0kb upstream 10.0kb upstream 10768 true Chr05: 1015082-1025849 Sorghum bicolor
Sobic.005G011400 10.0kb upstream 10.0kb upstream 10000 false Chr05: 1015082-1025081 Sorghum bicolor
Sobic.005G011400 10.0kb downstream 10.0kb downstream 10768 true Chr05: 1025082-1035849 Sorghum bicolor
Sobic.005G011400 10.0kb downstream 10.0kb downstream 10000 false Chr05: 1025850-1035849 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122191867 5267 Panicoideae View MSA
124579485 5269 Grass View MSA
122042285 5273 Angiosperm View MSA
121346098 5274 Embryophyte View MSA
123425317 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.864       High
cufflinks 1.552       Low
cufflinks 2.073        
cufflinks 3.845        
cufflinks 3.18        
cufflinks 4.537       High
cufflinks 2.298        
cufflinks 2.913        
cufflinks 5.569       High
cufflinks 4.91       High
cufflinks 3.629        
cufflinks 3.736        
cufflinks 5.432       High
cufflinks 3.766        
cufflinks 3.19        
cufflinks 2.613        
cufflinks 2.82        
cufflinks 2.388        
cufflinks 1.257       Low
cufflinks 3.466        
cufflinks 5.727       High
cufflinks 4.836       High
cufflinks 2.59        
cufflinks 2.405        
cufflinks 3.119        
cufflinks 1.463       Low
cufflinks 3.212        
cufflinks 0.915       Low
cufflinks 2.951        
cufflinks 4.162        

0 Strain