Gene : Sobic.001G121900 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR23086:SF33 - PHOSPHATIDYLINOSITOL 4-PHOSPHATE 5-KINASE 1-RELATED Genomic Order:  1267
Name:  ? Sobic.001G121900 Secondary Identifier:  ? PAC:37937667
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-6351 Sorghum bicolor pathologic  
Sbicolor PWY-6352 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G121900 0.5kb upstream 0.5kb upstream 4878 true Chr01: 9557008-9561885 Sorghum bicolor
Sobic.001G121900 0.5kb upstream 0.5kb upstream 500 false Chr01: 9557008-9557507 Sorghum bicolor
Sobic.001G121900 0.5kb downstream 0.5kb downstream 4878 true Chr01: 9557508-9562385 Sorghum bicolor
Sobic.001G121900 0.5kb downstream 0.5kb downstream 500 false Chr01: 9561886-9562385 Sorghum bicolor
Sobic.001G121900 1.0kb upstream 1.0kb upstream 5378 true Chr01: 9556508-9561885 Sorghum bicolor
Sobic.001G121900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 9556508-9557507 Sorghum bicolor
Sobic.001G121900 1.0kb downstream 1.0kb downstream 5378 true Chr01: 9557508-9562885 Sorghum bicolor
Sobic.001G121900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 9561886-9562885 Sorghum bicolor
Sobic.001G121900 2.0kb upstream 2.0kb upstream 6378 true Chr01: 9555508-9561885 Sorghum bicolor
Sobic.001G121900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 9555508-9557507 Sorghum bicolor
Sobic.001G121900 2.0kb downstream 2.0kb downstream 6378 true Chr01: 9557508-9563885 Sorghum bicolor
Sobic.001G121900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 9561886-9563885 Sorghum bicolor
Sobic.001G121900 5.0kb upstream 5.0kb upstream 9378 true Chr01: 9552508-9561885 Sorghum bicolor
Sobic.001G121900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 9552508-9557507 Sorghum bicolor
Sobic.001G121900 5.0kb downstream 5.0kb downstream 9378 true Chr01: 9557508-9566885 Sorghum bicolor
Sobic.001G121900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 9561886-9566885 Sorghum bicolor
Sobic.001G121900 10.0kb upstream 10.0kb upstream 14378 true Chr01: 9547508-9561885 Sorghum bicolor
Sobic.001G121900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 9547508-9557507 Sorghum bicolor
Sobic.001G121900 10.0kb downstream 10.0kb downstream 14378 true Chr01: 9557508-9571885 Sorghum bicolor
Sobic.001G121900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 9561886-9571885 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176667 5267 Panicoideae View MSA
124568794 5269 Grass View MSA
122045455 5273 Angiosperm View MSA
121310450 5274 Embryophyte View MSA
123428791 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.373       Low
cufflinks 2.621       Low
cufflinks 6.728        
cufflinks 4.471       Low
cufflinks 36.384     High High
cufflinks 18.649     High  
cufflinks 13.594     High  
cufflinks 15.624     High  
cufflinks 10.799        
cufflinks 10.785        
cufflinks 9.03        
cufflinks 9.968        
cufflinks 25.35     High High
cufflinks 10.964        
cufflinks 21.413     High  
cufflinks 3.354       Low
cufflinks 13.022     High  
cufflinks 12.98     High  
cufflinks 12.403     High  
cufflinks 12.499     High  
cufflinks 35.118     High High
cufflinks 14.16     High  
cufflinks 10.046        
cufflinks 10.385        
cufflinks 5.141       Low
cufflinks 5.517       Low
cufflinks 11.038        
cufflinks 1.676       Low
cufflinks 20.895     High  
cufflinks 18.331     High  

0 Strain