Gene : Sobic.001G104300 S. bicolor v3.1.1
Defline:  (1 of 1) 2.1.1.193 - 16S rRNA (uracil(1498)-N(3))-methyltransferase / M(3)U(1498) specific methyltransferase Genomic Order:  1075
Name:  ? Sobic.001G104300 Secondary Identifier:  ? PAC:37945169
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G104300 0.5kb upstream 0.5kb upstream 3995 true Chr01: 7994108-7998102 Sorghum bicolor
Sobic.001G104300 0.5kb upstream 0.5kb upstream 500 false Chr01: 7997603-7998102 Sorghum bicolor
Sobic.001G104300 0.5kb downstream 0.5kb downstream 3995 true Chr01: 7993608-7997602 Sorghum bicolor
Sobic.001G104300 0.5kb downstream 0.5kb downstream 500 false Chr01: 7993608-7994107 Sorghum bicolor
Sobic.001G104300 1.0kb upstream 1.0kb upstream 4495 true Chr01: 7994108-7998602 Sorghum bicolor
Sobic.001G104300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 7997603-7998602 Sorghum bicolor
Sobic.001G104300 1.0kb downstream 1.0kb downstream 4495 true Chr01: 7993108-7997602 Sorghum bicolor
Sobic.001G104300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 7993108-7994107 Sorghum bicolor
Sobic.001G104300 2.0kb upstream 2.0kb upstream 5495 true Chr01: 7994108-7999602 Sorghum bicolor
Sobic.001G104300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 7997603-7999602 Sorghum bicolor
Sobic.001G104300 2.0kb downstream 2.0kb downstream 5495 true Chr01: 7992108-7997602 Sorghum bicolor
Sobic.001G104300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 7992108-7994107 Sorghum bicolor
Sobic.001G104300 5.0kb upstream 5.0kb upstream 8495 true Chr01: 7994108-8002602 Sorghum bicolor
Sobic.001G104300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 7997603-8002602 Sorghum bicolor
Sobic.001G104300 5.0kb downstream 5.0kb downstream 8495 true Chr01: 7989108-7997602 Sorghum bicolor
Sobic.001G104300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 7989108-7994107 Sorghum bicolor
Sobic.001G104300 10.0kb upstream 10.0kb upstream 13495 true Chr01: 7994108-8007602 Sorghum bicolor
Sobic.001G104300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 7997603-8007602 Sorghum bicolor
Sobic.001G104300 10.0kb downstream 10.0kb downstream 13495 true Chr01: 7984108-7997602 Sorghum bicolor
Sobic.001G104300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 7984108-7994107 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177056 5267 Panicoideae View MSA
124572813 5269 Grass View MSA
122046212 5273 Angiosperm View MSA
121345498 5274 Embryophyte View MSA
123427980 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.528       High
cufflinks 0.118       Low
cufflinks 0.237        
cufflinks 0.156        
cufflinks 0.391        
cufflinks 0.295        
cufflinks 0.568       High
cufflinks 0.563       High
cufflinks 0.366        
cufflinks 0.253        
cufflinks 0.114       Low
cufflinks 0.15        
cufflinks 0.17        
cufflinks 0.131        
cufflinks 0.219        
cufflinks 0.104       Low
cufflinks 0.613       High
cufflinks 0.721       High
cufflinks 0.126       Low
cufflinks 0.301        
cufflinks 0.535       High
cufflinks 0.174        
cufflinks 0.144        
cufflinks 0.179        
cufflinks 0.058       Low
cufflinks 0.089       Low
cufflinks 0.141        
cufflinks 1.222       High
cufflinks 1.219       High
cufflinks 0.378        

0 Strain