Gene : Sobic.001G097100 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR11680:SF10 - SERINE HYDROXYMETHYLTRANSFERASE 1, MITOCHONDRIAL Genomic Order:  1001
Name:  ? Sobic.001G097100 Secondary Identifier:  ? PAC:37941363
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor GLYSYN-PWY Sorghum bicolor pathologic  
Sbicolor PWY-2161 Sorghum bicolor pathologic  
Sbicolor PWY-3841 Sorghum bicolor pathologic  
Sbicolor SER-GLYSYN-PWY Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G097100 0.5kb upstream 0.5kb upstream 6332 true Chr01: 7459064-7465395 Sorghum bicolor
Sobic.001G097100 0.5kb upstream 0.5kb upstream 500 false Chr01: 7464896-7465395 Sorghum bicolor
Sobic.001G097100 0.5kb downstream 0.5kb downstream 6332 true Chr01: 7458564-7464895 Sorghum bicolor
Sobic.001G097100 0.5kb downstream 0.5kb downstream 500 false Chr01: 7458564-7459063 Sorghum bicolor
Sobic.001G097100 1.0kb upstream 1.0kb upstream 6832 true Chr01: 7459064-7465895 Sorghum bicolor
Sobic.001G097100 1.0kb upstream 1.0kb upstream 1000 false Chr01: 7464896-7465895 Sorghum bicolor
Sobic.001G097100 1.0kb downstream 1.0kb downstream 6832 true Chr01: 7458064-7464895 Sorghum bicolor
Sobic.001G097100 1.0kb downstream 1.0kb downstream 1000 false Chr01: 7458064-7459063 Sorghum bicolor
Sobic.001G097100 2.0kb upstream 2.0kb upstream 7832 true Chr01: 7459064-7466895 Sorghum bicolor
Sobic.001G097100 2.0kb upstream 2.0kb upstream 2000 false Chr01: 7464896-7466895 Sorghum bicolor
Sobic.001G097100 2.0kb downstream 2.0kb downstream 7832 true Chr01: 7457064-7464895 Sorghum bicolor
Sobic.001G097100 2.0kb downstream 2.0kb downstream 2000 false Chr01: 7457064-7459063 Sorghum bicolor
Sobic.001G097100 5.0kb upstream 5.0kb upstream 10832 true Chr01: 7459064-7469895 Sorghum bicolor
Sobic.001G097100 5.0kb upstream 5.0kb upstream 5000 false Chr01: 7464896-7469895 Sorghum bicolor
Sobic.001G097100 5.0kb downstream 5.0kb downstream 10832 true Chr01: 7454064-7464895 Sorghum bicolor
Sobic.001G097100 5.0kb downstream 5.0kb downstream 5000 false Chr01: 7454064-7459063 Sorghum bicolor
Sobic.001G097100 10.0kb upstream 10.0kb upstream 15832 true Chr01: 7459064-7474895 Sorghum bicolor
Sobic.001G097100 10.0kb upstream 10.0kb upstream 10000 false Chr01: 7464896-7474895 Sorghum bicolor
Sobic.001G097100 10.0kb downstream 10.0kb downstream 15832 true Chr01: 7449064-7464895 Sorghum bicolor
Sobic.001G097100 10.0kb downstream 10.0kb downstream 10000 false Chr01: 7449064-7459063 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187926 5267 Panicoideae View MSA
124570013 5269 Grass View MSA
122045639 5273 Angiosperm View MSA
121346714 5274 Embryophyte View MSA
123424879 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.306       Low
cufflinks 20.118     High  
cufflinks 17.752     High  
cufflinks 12.492     High  
cufflinks 9.663       Low
cufflinks 25.696     High High
cufflinks 17.428     High  
cufflinks 21.758     High  
cufflinks 14.037     High  
cufflinks 11.834     High  
cufflinks 21.499     High  
cufflinks 21.813     High  
cufflinks 36.771     High High
cufflinks 17.645     High  
cufflinks 12.821     High  
cufflinks 24.905     High  
cufflinks 15.827     High  
cufflinks 19.836     High  
cufflinks 17.661     High  
cufflinks 14.335     High  
cufflinks 5.472       Low
cufflinks 16.058     High  
cufflinks 19.307     High  
cufflinks 17.782     High  
cufflinks 15.133     High  
cufflinks 20.641     High  
cufflinks 16.902     High  
cufflinks 4.109       Low
cufflinks 30.19     High High
cufflinks 12.527     High  

0 Strain