Gene : Sobic.001G215000 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR11877//PTHR11877:SF25 - HYDROXYMETHYLGLUTARYL-COA SYNTHASE // SUBFAMILY NOT NAMED Genomic Order:  2236
Name:  ? Sobic.001G215000 Secondary Identifier:  ? PAC:37939100
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY1F-FLAVSYN Sorghum bicolor pathologic  
Sbicolor PWY-6787 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G215000 0.5kb upstream 0.5kb upstream 3566 true Chr01: 19809072-19812637 Sorghum bicolor
Sobic.001G215000 0.5kb upstream 0.5kb upstream 500 false Chr01: 19812138-19812637 Sorghum bicolor
Sobic.001G215000 0.5kb downstream 0.5kb downstream 3566 true Chr01: 19808572-19812137 Sorghum bicolor
Sobic.001G215000 0.5kb downstream 0.5kb downstream 500 false Chr01: 19808572-19809071 Sorghum bicolor
Sobic.001G215000 1.0kb upstream 1.0kb upstream 4066 true Chr01: 19809072-19813137 Sorghum bicolor
Sobic.001G215000 1.0kb upstream 1.0kb upstream 1000 false Chr01: 19812138-19813137 Sorghum bicolor
Sobic.001G215000 1.0kb downstream 1.0kb downstream 4066 true Chr01: 19808072-19812137 Sorghum bicolor
Sobic.001G215000 1.0kb downstream 1.0kb downstream 1000 false Chr01: 19808072-19809071 Sorghum bicolor
Sobic.001G215000 2.0kb upstream 2.0kb upstream 5066 true Chr01: 19809072-19814137 Sorghum bicolor
Sobic.001G215000 2.0kb upstream 2.0kb upstream 2000 false Chr01: 19812138-19814137 Sorghum bicolor
Sobic.001G215000 2.0kb downstream 2.0kb downstream 5066 true Chr01: 19807072-19812137 Sorghum bicolor
Sobic.001G215000 2.0kb downstream 2.0kb downstream 2000 false Chr01: 19807072-19809071 Sorghum bicolor
Sobic.001G215000 5.0kb upstream 5.0kb upstream 8066 true Chr01: 19809072-19817137 Sorghum bicolor
Sobic.001G215000 5.0kb upstream 5.0kb upstream 5000 false Chr01: 19812138-19817137 Sorghum bicolor
Sobic.001G215000 5.0kb downstream 5.0kb downstream 8066 true Chr01: 19804072-19812137 Sorghum bicolor
Sobic.001G215000 5.0kb downstream 5.0kb downstream 5000 false Chr01: 19804072-19809071 Sorghum bicolor
Sobic.001G215000 10.0kb upstream 10.0kb upstream 13066 true Chr01: 19809072-19822137 Sorghum bicolor
Sobic.001G215000 10.0kb upstream 10.0kb upstream 10000 false Chr01: 19812138-19822137 Sorghum bicolor
Sobic.001G215000 10.0kb downstream 10.0kb downstream 13066 true Chr01: 19799072-19812137 Sorghum bicolor
Sobic.001G215000 10.0kb downstream 10.0kb downstream 10000 false Chr01: 19799072-19809071 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179338 5267 Panicoideae View MSA
124568709 5269 Grass View MSA
122045794 5273 Angiosperm View MSA
121348952 5274 Embryophyte View MSA
123428386 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.057     Low  
cufflinks 0.35       High
cufflinks 0.109        
cufflinks 0.056     Low  
cufflinks 0.005     Low Low
cufflinks 0.041     Low  
cufflinks 0.18        
cufflinks 1.209       High
cufflinks 0.011     Low Low
cufflinks 0.044     Low  
cufflinks 0.09        
cufflinks 0.194        
cufflinks 0.009     Low Low
cufflinks 0.182        
cufflinks 0.08     Low  
cufflinks 0.182        
cufflinks 0.2        
cufflinks 0.066     Low  
cufflinks 0.007     Low Low
cufflinks 0.18        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.076     Low  
cufflinks 0.225        
cufflinks 0.204        
cufflinks 0.044     Low  
cufflinks 0.871       High
cufflinks 0.011     Low Low
cufflinks 0.015     Low Low
cufflinks 0.038     Low  
cufflinks 0.189        

0 Strain