Gene : Sobic.001G204900 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR13780//PTHR13780:SF55 - AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT // SUBFAMILY NOT NAMED Genomic Order:  2131
Name:  ? Sobic.001G204900 Secondary Identifier:  ? PAC:37944757
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G204900 0.5kb upstream 0.5kb upstream 2899 true Chr01: 18702177-18705075 Sorghum bicolor
Sobic.001G204900 0.5kb upstream 0.5kb upstream 500 false Chr01: 18704576-18705075 Sorghum bicolor
Sobic.001G204900 0.5kb downstream 0.5kb downstream 2899 true Chr01: 18701677-18704575 Sorghum bicolor
Sobic.001G204900 0.5kb downstream 0.5kb downstream 500 false Chr01: 18701677-18702176 Sorghum bicolor
Sobic.001G204900 1.0kb upstream 1.0kb upstream 3399 true Chr01: 18702177-18705575 Sorghum bicolor
Sobic.001G204900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 18704576-18705575 Sorghum bicolor
Sobic.001G204900 1.0kb downstream 1.0kb downstream 3399 true Chr01: 18701177-18704575 Sorghum bicolor
Sobic.001G204900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 18701177-18702176 Sorghum bicolor
Sobic.001G204900 2.0kb upstream 2.0kb upstream 4399 true Chr01: 18702177-18706575 Sorghum bicolor
Sobic.001G204900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 18704576-18706575 Sorghum bicolor
Sobic.001G204900 2.0kb downstream 2.0kb downstream 4399 true Chr01: 18700177-18704575 Sorghum bicolor
Sobic.001G204900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 18700177-18702176 Sorghum bicolor
Sobic.001G204900 5.0kb upstream 5.0kb upstream 7399 true Chr01: 18702177-18709575 Sorghum bicolor
Sobic.001G204900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 18704576-18709575 Sorghum bicolor
Sobic.001G204900 5.0kb downstream 5.0kb downstream 7399 true Chr01: 18697177-18704575 Sorghum bicolor
Sobic.001G204900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 18697177-18702176 Sorghum bicolor
Sobic.001G204900 10.0kb upstream 10.0kb upstream 12399 true Chr01: 18702177-18714575 Sorghum bicolor
Sobic.001G204900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 18704576-18714575 Sorghum bicolor
Sobic.001G204900 10.0kb downstream 10.0kb downstream 12399 true Chr01: 18692177-18704575 Sorghum bicolor
Sobic.001G204900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 18692177-18702176 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122176802 5267 Panicoideae View MSA
124577034 5269 Grass View MSA
122042331 5273 Angiosperm View MSA
121351611 5274 Embryophyte View MSA
123382245 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.93        
cufflinks 2.83        
cufflinks 3.363        
cufflinks 2.184        
cufflinks 2.845        
cufflinks 7.064       High
cufflinks 1.089       Low
cufflinks 2.394        
cufflinks 2.475        
cufflinks 1.679        
cufflinks 2.862        
cufflinks 2.797        
cufflinks 2.261        
cufflinks 1.357        
cufflinks 1.482        
cufflinks 1.363        
cufflinks 0.824       Low
cufflinks 1.16       Low
cufflinks 2.423        
cufflinks 0.644       Low
cufflinks 2.33        
cufflinks 2.125        
cufflinks 1.524        
cufflinks 1.309       Low
cufflinks 2.995        
cufflinks 2.335        
cufflinks 4.947       High
cufflinks 3.48        
cufflinks 1.753        
cufflinks 2.085        

0 Strain