Gene : Sobic.003G424300 S. bicolor v3.1.1
Defline:  (1 of 1) K00286 - pyrroline-5-carboxylate reductase (E1.5.1.2, proC) Genomic Order:  4461
Name:  ? Sobic.003G424300 Secondary Identifier:  ? PAC:37917092
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor ARG-PRO-PWY Sorghum bicolor pathologic  
Sbicolor PROSYN-PWY Sorghum bicolor pathologic  
Sbicolor PWY-3341 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G424300 0.5kb upstream 0.5kb upstream 3796 true Chr03: 72845339-72849134 Sorghum bicolor
Sobic.003G424300 0.5kb upstream 0.5kb upstream 500 false Chr03: 72848635-72849134 Sorghum bicolor
Sobic.003G424300 0.5kb downstream 0.5kb downstream 3796 true Chr03: 72844839-72848634 Sorghum bicolor
Sobic.003G424300 0.5kb downstream 0.5kb downstream 500 false Chr03: 72844839-72845338 Sorghum bicolor
Sobic.003G424300 1.0kb upstream 1.0kb upstream 4296 true Chr03: 72845339-72849634 Sorghum bicolor
Sobic.003G424300 1.0kb upstream 1.0kb upstream 1000 false Chr03: 72848635-72849634 Sorghum bicolor
Sobic.003G424300 1.0kb downstream 1.0kb downstream 4296 true Chr03: 72844339-72848634 Sorghum bicolor
Sobic.003G424300 1.0kb downstream 1.0kb downstream 1000 false Chr03: 72844339-72845338 Sorghum bicolor
Sobic.003G424300 2.0kb upstream 2.0kb upstream 5296 true Chr03: 72845339-72850634 Sorghum bicolor
Sobic.003G424300 2.0kb upstream 2.0kb upstream 2000 false Chr03: 72848635-72850634 Sorghum bicolor
Sobic.003G424300 2.0kb downstream 2.0kb downstream 5296 true Chr03: 72843339-72848634 Sorghum bicolor
Sobic.003G424300 2.0kb downstream 2.0kb downstream 2000 false Chr03: 72843339-72845338 Sorghum bicolor
Sobic.003G424300 5.0kb upstream 5.0kb upstream 8296 true Chr03: 72845339-72853634 Sorghum bicolor
Sobic.003G424300 5.0kb upstream 5.0kb upstream 5000 false Chr03: 72848635-72853634 Sorghum bicolor
Sobic.003G424300 5.0kb downstream 5.0kb downstream 8296 true Chr03: 72840339-72848634 Sorghum bicolor
Sobic.003G424300 5.0kb downstream 5.0kb downstream 5000 false Chr03: 72840339-72845338 Sorghum bicolor
Sobic.003G424300 10.0kb upstream 10.0kb upstream 13296 true Chr03: 72845339-72858634 Sorghum bicolor
Sobic.003G424300 10.0kb upstream 10.0kb upstream 10000 false Chr03: 72848635-72858634 Sorghum bicolor
Sobic.003G424300 10.0kb downstream 10.0kb downstream 13296 true Chr03: 72835339-72848634 Sorghum bicolor
Sobic.003G424300 10.0kb downstream 10.0kb downstream 10000 false Chr03: 72835339-72845338 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185898 5267 Panicoideae View MSA
124579215 5269 Grass View MSA
122043656 5273 Angiosperm View MSA
123428906 5275 Viridiplantae View MSA
121346927 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.003        
cufflinks 0.388       Low
cufflinks 0.642       Low
cufflinks 1.981        
cufflinks 5.128        
cufflinks 1.91        
cufflinks 2.09        
cufflinks 0.695       Low
cufflinks 5.149        
cufflinks 6.261       High
cufflinks 3.194        
cufflinks 1.702        
cufflinks 5.18        
cufflinks 2.32        
cufflinks 4.426        
cufflinks 0.388       Low
cufflinks 2.494        
cufflinks 2.412        
cufflinks 0.679       Low
cufflinks 1.449        
cufflinks 7.697       High
cufflinks 4.181        
cufflinks 2.927        
cufflinks 3.646        
cufflinks 0.608       Low
cufflinks 0.438       Low
cufflinks 2.594        
cufflinks 0.768       Low
cufflinks 1.447        
cufflinks 8.354       High

0 Strain