Gene : Sobic.001G194200 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR12358//PTHR12358:SF39 - SPHINGOSINE KINASE // SUBFAMILY NOT NAMED Genomic Order:  2013
Name:  ? Sobic.001G194200 Secondary Identifier:  ? PAC:37940923
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-5129 Sorghum bicolor pathologic  
Sbicolor PWY-6483 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G194200 0.5kb upstream 0.5kb upstream 9832 true Chr01: 17290683-17300514 Sorghum bicolor
Sobic.001G194200 0.5kb upstream 0.5kb upstream 500 false Chr01: 17300015-17300514 Sorghum bicolor
Sobic.001G194200 0.5kb downstream 0.5kb downstream 9832 true Chr01: 17290183-17300014 Sorghum bicolor
Sobic.001G194200 0.5kb downstream 0.5kb downstream 500 false Chr01: 17290183-17290682 Sorghum bicolor
Sobic.001G194200 1.0kb upstream 1.0kb upstream 10332 true Chr01: 17290683-17301014 Sorghum bicolor
Sobic.001G194200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 17300015-17301014 Sorghum bicolor
Sobic.001G194200 1.0kb downstream 1.0kb downstream 10332 true Chr01: 17289683-17300014 Sorghum bicolor
Sobic.001G194200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 17289683-17290682 Sorghum bicolor
Sobic.001G194200 2.0kb upstream 2.0kb upstream 11332 true Chr01: 17290683-17302014 Sorghum bicolor
Sobic.001G194200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 17300015-17302014 Sorghum bicolor
Sobic.001G194200 2.0kb downstream 2.0kb downstream 11332 true Chr01: 17288683-17300014 Sorghum bicolor
Sobic.001G194200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 17288683-17290682 Sorghum bicolor
Sobic.001G194200 5.0kb upstream 5.0kb upstream 14332 true Chr01: 17290683-17305014 Sorghum bicolor
Sobic.001G194200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 17300015-17305014 Sorghum bicolor
Sobic.001G194200 5.0kb downstream 5.0kb downstream 14332 true Chr01: 17285683-17300014 Sorghum bicolor
Sobic.001G194200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 17285683-17290682 Sorghum bicolor
Sobic.001G194200 10.0kb upstream 10.0kb upstream 19332 true Chr01: 17290683-17310014 Sorghum bicolor
Sobic.001G194200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 17300015-17310014 Sorghum bicolor
Sobic.001G194200 10.0kb downstream 10.0kb downstream 19332 true Chr01: 17280683-17300014 Sorghum bicolor
Sobic.001G194200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 17280683-17290682 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187978 5267 Panicoideae View MSA
124577757 5269 Grass View MSA
122046814 5273 Angiosperm View MSA
121349004 5274 Embryophyte View MSA
123428396 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.853       Low
cufflinks 4.277       Low
cufflinks 6.39        
cufflinks 6.603        
cufflinks 7.959        
cufflinks 8.095        
cufflinks 6.443        
cufflinks 4.222       Low
cufflinks 11.362       High
cufflinks 11.108       High
cufflinks 5.543        
cufflinks 8.328        
cufflinks 9.063       High
cufflinks 5.9        
cufflinks 8.047        
cufflinks 5.78        
cufflinks 6.407        
cufflinks 6.576        
cufflinks 6.295        
cufflinks 8.444        
cufflinks 8.913       High
cufflinks 4.737       Low
cufflinks 5.961        
cufflinks 6.033        
cufflinks 6.793        
cufflinks 4.289       Low
cufflinks 7.399        
cufflinks 3.617       Low
cufflinks 7.138        
cufflinks 8.048        

0 Strain