Gene : Sobic.001G187200 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR12668:SF0 - UPF0136 MEMBRANE PROTEIN CG5532 Genomic Order:  1944
Name:  ? Sobic.001G187200 Secondary Identifier:  ? PAC:37939998
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G187200 0.5kb upstream 0.5kb upstream 3133 true Chr01: 16450304-16453436 Sorghum bicolor
Sobic.001G187200 0.5kb upstream 0.5kb upstream 500 false Chr01: 16450304-16450803 Sorghum bicolor
Sobic.001G187200 0.5kb downstream 0.5kb downstream 3133 true Chr01: 16450804-16453936 Sorghum bicolor
Sobic.001G187200 0.5kb downstream 0.5kb downstream 500 false Chr01: 16453437-16453936 Sorghum bicolor
Sobic.001G187200 1.0kb upstream 1.0kb upstream 3633 true Chr01: 16449804-16453436 Sorghum bicolor
Sobic.001G187200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 16449804-16450803 Sorghum bicolor
Sobic.001G187200 1.0kb downstream 1.0kb downstream 3633 true Chr01: 16450804-16454436 Sorghum bicolor
Sobic.001G187200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 16453437-16454436 Sorghum bicolor
Sobic.001G187200 2.0kb upstream 2.0kb upstream 4633 true Chr01: 16448804-16453436 Sorghum bicolor
Sobic.001G187200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 16448804-16450803 Sorghum bicolor
Sobic.001G187200 2.0kb downstream 2.0kb downstream 4633 true Chr01: 16450804-16455436 Sorghum bicolor
Sobic.001G187200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 16453437-16455436 Sorghum bicolor
Sobic.001G187200 5.0kb upstream 5.0kb upstream 7633 true Chr01: 16445804-16453436 Sorghum bicolor
Sobic.001G187200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 16445804-16450803 Sorghum bicolor
Sobic.001G187200 5.0kb downstream 5.0kb downstream 7633 true Chr01: 16450804-16458436 Sorghum bicolor
Sobic.001G187200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 16453437-16458436 Sorghum bicolor
Sobic.001G187200 10.0kb upstream 10.0kb upstream 12633 true Chr01: 16440804-16453436 Sorghum bicolor
Sobic.001G187200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 16440804-16450803 Sorghum bicolor
Sobic.001G187200 10.0kb downstream 10.0kb downstream 12633 true Chr01: 16450804-16463436 Sorghum bicolor
Sobic.001G187200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 16453437-16463436 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185013 5267 Panicoideae View MSA
124586519 5269 Grass View MSA
122043738 5273 Angiosperm View MSA
121351316 5274 Embryophyte View MSA
123426664 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.117       High
cufflinks 1.482       Low
cufflinks 3.614        
cufflinks 7.303        
cufflinks 5.233        
cufflinks 7.956        
cufflinks 4.786        
cufflinks 2.496       Low
cufflinks 5.195        
cufflinks 4.976        
cufflinks 7.397        
cufflinks 7.538        
cufflinks 4.1        
cufflinks 8.93       High
cufflinks 3.909        
cufflinks 4.048        
cufflinks 4.722        
cufflinks 5.165        
cufflinks 3.403        
cufflinks 6.25        
cufflinks 4.871        
cufflinks 11.599       High
cufflinks 9.243       High
cufflinks 7.881        
cufflinks 2.693       Low
cufflinks 1.382       Low
cufflinks 6.183        
cufflinks 7.985        
cufflinks 3.89        
cufflinks 4.513        

0 Strain