Gene : Sobic.001G187800 S. bicolor v3.1.1
Defline:  (1 of 3) PTHR10091//PTHR10091:SF8 - ALDOSE-1-EPIMERASE // SUBFAMILY NOT NAMED Genomic Order:  1950
Name:  ? Sobic.001G187800 Secondary Identifier:  ? PAC:37938059
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY66-422 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G187800 0.5kb upstream 0.5kb upstream 12100 true Chr01: 16580487-16592586 Sorghum bicolor
Sobic.001G187800 0.5kb upstream 0.5kb upstream 500 false Chr01: 16592087-16592586 Sorghum bicolor
Sobic.001G187800 0.5kb downstream 0.5kb downstream 12100 true Chr01: 16579987-16592086 Sorghum bicolor
Sobic.001G187800 0.5kb downstream 0.5kb downstream 500 false Chr01: 16579987-16580486 Sorghum bicolor
Sobic.001G187800 1.0kb upstream 1.0kb upstream 12600 true Chr01: 16580487-16593086 Sorghum bicolor
Sobic.001G187800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 16592087-16593086 Sorghum bicolor
Sobic.001G187800 1.0kb downstream 1.0kb downstream 12600 true Chr01: 16579487-16592086 Sorghum bicolor
Sobic.001G187800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 16579487-16580486 Sorghum bicolor
Sobic.001G187800 2.0kb upstream 2.0kb upstream 13600 true Chr01: 16580487-16594086 Sorghum bicolor
Sobic.001G187800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 16592087-16594086 Sorghum bicolor
Sobic.001G187800 2.0kb downstream 2.0kb downstream 13600 true Chr01: 16578487-16592086 Sorghum bicolor
Sobic.001G187800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 16578487-16580486 Sorghum bicolor
Sobic.001G187800 5.0kb upstream 5.0kb upstream 16600 true Chr01: 16580487-16597086 Sorghum bicolor
Sobic.001G187800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 16592087-16597086 Sorghum bicolor
Sobic.001G187800 5.0kb downstream 5.0kb downstream 16600 true Chr01: 16575487-16592086 Sorghum bicolor
Sobic.001G187800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 16575487-16580486 Sorghum bicolor
Sobic.001G187800 10.0kb upstream 10.0kb upstream 21600 true Chr01: 16580487-16602086 Sorghum bicolor
Sobic.001G187800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 16592087-16602086 Sorghum bicolor
Sobic.001G187800 10.0kb downstream 10.0kb downstream 21600 true Chr01: 16570487-16592086 Sorghum bicolor
Sobic.001G187800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 16570487-16580486 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188879 5267 Panicoideae View MSA
124581983 5269 Grass View MSA
122043649 5273 Angiosperm View MSA
121346493 5274 Embryophyte View MSA
123425845 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.164        
cufflinks 0.017     Low Low
cufflinks 0.015     Low Low
cufflinks 0.06     Low  
cufflinks 0.331       High
cufflinks 0.129        
cufflinks 0.165        
cufflinks 0.043     Low Low
cufflinks 0.246        
cufflinks 0.244        
cufflinks 0.189        
cufflinks 0.158        
cufflinks 0.16        
cufflinks 0.152        
cufflinks 0.139        
cufflinks 0.024     Low Low
cufflinks 0.173        
cufflinks 0.163        
cufflinks 0.071     Low  
cufflinks 0.152        
cufflinks 0.366       High
cufflinks 0.22        
cufflinks 0.187        
cufflinks 0.185        
cufflinks 0.031     Low Low
cufflinks 0.016     Low Low
cufflinks 0.087     Low  
cufflinks 0.083        
cufflinks 0.185        
cufflinks 0.205        

0 Strain