Gene : Sobic.003G436600 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR13483:SF3 - BOX C/D SNORNA PROTEIN 1 Genomic Order:  4581
Name:  ? Sobic.003G436600 Secondary Identifier:  ? PAC:37914273
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G436600 0.5kb upstream 0.5kb upstream 4315 true Chr03: 73740979-73745293 Sorghum bicolor
Sobic.003G436600 0.5kb upstream 0.5kb upstream 500 false Chr03: 73744794-73745293 Sorghum bicolor
Sobic.003G436600 0.5kb downstream 0.5kb downstream 4315 true Chr03: 73740479-73744793 Sorghum bicolor
Sobic.003G436600 0.5kb downstream 0.5kb downstream 500 false Chr03: 73740479-73740978 Sorghum bicolor
Sobic.003G436600 1.0kb upstream 1.0kb upstream 4815 true Chr03: 73740979-73745793 Sorghum bicolor
Sobic.003G436600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 73744794-73745793 Sorghum bicolor
Sobic.003G436600 1.0kb downstream 1.0kb downstream 4815 true Chr03: 73739979-73744793 Sorghum bicolor
Sobic.003G436600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 73739979-73740978 Sorghum bicolor
Sobic.003G436600 2.0kb upstream 2.0kb upstream 5815 true Chr03: 73740979-73746793 Sorghum bicolor
Sobic.003G436600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 73744794-73746793 Sorghum bicolor
Sobic.003G436600 2.0kb downstream 2.0kb downstream 5815 true Chr03: 73738979-73744793 Sorghum bicolor
Sobic.003G436600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 73738979-73740978 Sorghum bicolor
Sobic.003G436600 5.0kb upstream 5.0kb upstream 8815 true Chr03: 73740979-73749793 Sorghum bicolor
Sobic.003G436600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 73744794-73749793 Sorghum bicolor
Sobic.003G436600 5.0kb downstream 5.0kb downstream 8815 true Chr03: 73735979-73744793 Sorghum bicolor
Sobic.003G436600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 73735979-73740978 Sorghum bicolor
Sobic.003G436600 10.0kb upstream 10.0kb upstream 13815 true Chr03: 73740979-73754793 Sorghum bicolor
Sobic.003G436600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 73744794-73754793 Sorghum bicolor
Sobic.003G436600 10.0kb downstream 10.0kb downstream 13815 true Chr03: 73730979-73744793 Sorghum bicolor
Sobic.003G436600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 73730979-73740978 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195717 5267 Panicoideae View MSA
124570464 5269 Grass View MSA
122043413 5273 Angiosperm View MSA
121347000 5274 Embryophyte View MSA
123426353 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.269     High High
cufflinks 0.485       Low
cufflinks 1.014       Low
cufflinks 3.356        
cufflinks 8.68       High
cufflinks 2.895        
cufflinks 1.757        
cufflinks 0.703       Low
cufflinks 5.413        
cufflinks 5.282        
cufflinks 3.789        
cufflinks 3.187        
cufflinks 3.801        
cufflinks 3.285        
cufflinks 3.928        
cufflinks 0.966       Low
cufflinks 1.984        
cufflinks 2.02        
cufflinks 2.124        
cufflinks 2.782        
cufflinks 11.155       High
cufflinks 3.461        
cufflinks 4.08        
cufflinks 3.831        
cufflinks 0.828       Low
cufflinks 0.471       Low
cufflinks 3.261        
cufflinks 11.268     High High
cufflinks 1.05       Low
cufflinks 7.028       High

0 Strain