Gene : Sobic.003G440600 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR11851//PTHR11851:SF141 - METALLOPROTEASE // SUBFAMILY NOT NAMED Genomic Order:  4620
Name:  ? Sobic.003G440600 Secondary Identifier:  ? PAC:37916737
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-3781 Sorghum bicolor pathologic  
Sbicolor PWY-7279 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.003G440600 0.5kb upstream 0.5kb upstream 4662 true Chr03: 73959325-73963986 Sorghum bicolor
Sobic.003G440600 0.5kb upstream 0.5kb upstream 500 false Chr03: 73959325-73959824 Sorghum bicolor
Sobic.003G440600 0.5kb downstream 0.5kb downstream 4662 true Chr03: 73959825-73964486 Sorghum bicolor
Sobic.003G440600 0.5kb downstream 0.5kb downstream 500 false Chr03: 73963987-73964486 Sorghum bicolor
Sobic.003G440600 1.0kb upstream 1.0kb upstream 5162 true Chr03: 73958825-73963986 Sorghum bicolor
Sobic.003G440600 1.0kb upstream 1.0kb upstream 1000 false Chr03: 73958825-73959824 Sorghum bicolor
Sobic.003G440600 1.0kb downstream 1.0kb downstream 5162 true Chr03: 73959825-73964986 Sorghum bicolor
Sobic.003G440600 1.0kb downstream 1.0kb downstream 1000 false Chr03: 73963987-73964986 Sorghum bicolor
Sobic.003G440600 2.0kb upstream 2.0kb upstream 6162 true Chr03: 73957825-73963986 Sorghum bicolor
Sobic.003G440600 2.0kb upstream 2.0kb upstream 2000 false Chr03: 73957825-73959824 Sorghum bicolor
Sobic.003G440600 2.0kb downstream 2.0kb downstream 6162 true Chr03: 73959825-73965986 Sorghum bicolor
Sobic.003G440600 2.0kb downstream 2.0kb downstream 2000 false Chr03: 73963987-73965986 Sorghum bicolor
Sobic.003G440600 5.0kb upstream 5.0kb upstream 9162 true Chr03: 73954825-73963986 Sorghum bicolor
Sobic.003G440600 5.0kb upstream 5.0kb upstream 5000 false Chr03: 73954825-73959824 Sorghum bicolor
Sobic.003G440600 5.0kb downstream 5.0kb downstream 9162 true Chr03: 73959825-73968986 Sorghum bicolor
Sobic.003G440600 5.0kb downstream 5.0kb downstream 5000 false Chr03: 73963987-73968986 Sorghum bicolor
Sobic.003G440600 10.0kb upstream 10.0kb upstream 14162 true Chr03: 73949825-73963986 Sorghum bicolor
Sobic.003G440600 10.0kb upstream 10.0kb upstream 10000 false Chr03: 73949825-73959824 Sorghum bicolor
Sobic.003G440600 10.0kb downstream 10.0kb downstream 14162 true Chr03: 73959825-73973986 Sorghum bicolor
Sobic.003G440600 10.0kb downstream 10.0kb downstream 10000 false Chr03: 73963987-73973986 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122187396 5267 Panicoideae View MSA
124577730 5269 Grass View MSA
122050410 5273 Angiosperm View MSA
121350423 5274 Embryophyte View MSA
123425006 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.581       High
cufflinks 0.21       Low
cufflinks 0.396       Low
cufflinks 0.611        
cufflinks 1.188        
cufflinks 0.94        
cufflinks 0.853        
cufflinks 0.179       Low
cufflinks 0.962        
cufflinks 1.232        
cufflinks 1.72        
cufflinks 1.39        
cufflinks 0.702        
cufflinks 1.588        
cufflinks 0.618        
cufflinks 0.35       Low
cufflinks 0.923        
cufflinks 1.091        
cufflinks 0.337       Low
cufflinks 1.009        
cufflinks 2.116       High
cufflinks 2.124       High
cufflinks 1.782        
cufflinks 1.883        
cufflinks 0.489        
cufflinks 0.22       Low
cufflinks 1.179        
cufflinks 0.749        
cufflinks 0.53        
cufflinks 1.349        

0 Strain