Gene : Sobic.001G163400 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR16092 - SEC3/SYNTAXIN-RELATED Genomic Order:  1699
Name:  ? Sobic.001G163400 Secondary Identifier:  ? PAC:37938843
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G163400 0.5kb upstream 0.5kb upstream 12214 true Chr01: 13454748-13466961 Sorghum bicolor
Sobic.001G163400 0.5kb upstream 0.5kb upstream 500 false Chr01: 13454748-13455247 Sorghum bicolor
Sobic.001G163400 0.5kb downstream 0.5kb downstream 12214 true Chr01: 13455248-13467461 Sorghum bicolor
Sobic.001G163400 0.5kb downstream 0.5kb downstream 500 false Chr01: 13466962-13467461 Sorghum bicolor
Sobic.001G163400 1.0kb upstream 1.0kb upstream 12714 true Chr01: 13454248-13466961 Sorghum bicolor
Sobic.001G163400 1.0kb upstream 1.0kb upstream 1000 false Chr01: 13454248-13455247 Sorghum bicolor
Sobic.001G163400 1.0kb downstream 1.0kb downstream 12714 true Chr01: 13455248-13467961 Sorghum bicolor
Sobic.001G163400 1.0kb downstream 1.0kb downstream 1000 false Chr01: 13466962-13467961 Sorghum bicolor
Sobic.001G163400 2.0kb upstream 2.0kb upstream 13714 true Chr01: 13453248-13466961 Sorghum bicolor
Sobic.001G163400 2.0kb upstream 2.0kb upstream 2000 false Chr01: 13453248-13455247 Sorghum bicolor
Sobic.001G163400 2.0kb downstream 2.0kb downstream 13714 true Chr01: 13455248-13468961 Sorghum bicolor
Sobic.001G163400 2.0kb downstream 2.0kb downstream 2000 false Chr01: 13466962-13468961 Sorghum bicolor
Sobic.001G163400 5.0kb upstream 5.0kb upstream 16714 true Chr01: 13450248-13466961 Sorghum bicolor
Sobic.001G163400 5.0kb upstream 5.0kb upstream 5000 false Chr01: 13450248-13455247 Sorghum bicolor
Sobic.001G163400 5.0kb downstream 5.0kb downstream 16714 true Chr01: 13455248-13471961 Sorghum bicolor
Sobic.001G163400 5.0kb downstream 5.0kb downstream 5000 false Chr01: 13466962-13471961 Sorghum bicolor
Sobic.001G163400 10.0kb upstream 10.0kb upstream 21714 true Chr01: 13445248-13466961 Sorghum bicolor
Sobic.001G163400 10.0kb upstream 10.0kb upstream 10000 false Chr01: 13445248-13455247 Sorghum bicolor
Sobic.001G163400 10.0kb downstream 10.0kb downstream 21714 true Chr01: 13455248-13476961 Sorghum bicolor
Sobic.001G163400 10.0kb downstream 10.0kb downstream 10000 false Chr01: 13466962-13476961 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178882 5267 Panicoideae View MSA
124577475 5269 Grass View MSA
122043094 5273 Angiosperm View MSA
121346884 5274 Embryophyte View MSA
123428518 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.208       Low
cufflinks 4.086       Low
cufflinks 8.938        
cufflinks 8.801        
cufflinks 18.352     High High
cufflinks 9.273        
cufflinks 12.601     High  
cufflinks 7.959       Low
cufflinks 11.769        
cufflinks 11.208        
cufflinks 15.682     High  
cufflinks 14.468     High  
cufflinks 18.418     High High
cufflinks 14.462     High  
cufflinks 15.099     High  
cufflinks 6.782       Low
cufflinks 13.228     High  
cufflinks 13.698     High  
cufflinks 6.804       Low
cufflinks 13.883     High  
cufflinks 14.62     High  
cufflinks 15.697     High  
cufflinks 15.756     High  
cufflinks 15.716     High  
cufflinks 9.549     High  
cufflinks 4.614       Low
cufflinks 13.96     High  
cufflinks 4.87       Low
cufflinks 14.918     High  
cufflinks 16.289     High  

0 Strain