Gene : Sobic.001G288100 S. bicolor v3.1.1
Defline:  (1 of 17) PF04640 - PLATZ transcription factor (PLATZ) Genomic Order:  3031
Name:  ? Sobic.001G288100 Secondary Identifier:  ? PAC:37940603
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G288100 0.5kb upstream 0.5kb upstream 3713 true Chr01: 56440381-56444093 Sorghum bicolor
Sobic.001G288100 0.5kb upstream 0.5kb upstream 500 false Chr01: 56440381-56440880 Sorghum bicolor
Sobic.001G288100 0.5kb downstream 0.5kb downstream 3713 true Chr01: 56440881-56444593 Sorghum bicolor
Sobic.001G288100 0.5kb downstream 0.5kb downstream 500 false Chr01: 56444094-56444593 Sorghum bicolor
Sobic.001G288100 1.0kb upstream 1.0kb upstream 4213 true Chr01: 56439881-56444093 Sorghum bicolor
Sobic.001G288100 1.0kb upstream 1.0kb upstream 1000 false Chr01: 56439881-56440880 Sorghum bicolor
Sobic.001G288100 1.0kb downstream 1.0kb downstream 4213 true Chr01: 56440881-56445093 Sorghum bicolor
Sobic.001G288100 1.0kb downstream 1.0kb downstream 1000 false Chr01: 56444094-56445093 Sorghum bicolor
Sobic.001G288100 2.0kb upstream 2.0kb upstream 5213 true Chr01: 56438881-56444093 Sorghum bicolor
Sobic.001G288100 2.0kb upstream 2.0kb upstream 2000 false Chr01: 56438881-56440880 Sorghum bicolor
Sobic.001G288100 2.0kb downstream 2.0kb downstream 5213 true Chr01: 56440881-56446093 Sorghum bicolor
Sobic.001G288100 2.0kb downstream 2.0kb downstream 2000 false Chr01: 56444094-56446093 Sorghum bicolor
Sobic.001G288100 5.0kb upstream 5.0kb upstream 8213 true Chr01: 56435881-56444093 Sorghum bicolor
Sobic.001G288100 5.0kb upstream 5.0kb upstream 5000 false Chr01: 56435881-56440880 Sorghum bicolor
Sobic.001G288100 5.0kb downstream 5.0kb downstream 8213 true Chr01: 56440881-56449093 Sorghum bicolor
Sobic.001G288100 5.0kb downstream 5.0kb downstream 5000 false Chr01: 56444094-56449093 Sorghum bicolor
Sobic.001G288100 10.0kb upstream 10.0kb upstream 13213 true Chr01: 56430881-56444093 Sorghum bicolor
Sobic.001G288100 10.0kb upstream 10.0kb upstream 10000 false Chr01: 56430881-56440880 Sorghum bicolor
Sobic.001G288100 10.0kb downstream 10.0kb downstream 13213 true Chr01: 56440881-56454093 Sorghum bicolor
Sobic.001G288100 10.0kb downstream 10.0kb downstream 10000 false Chr01: 56444094-56454093 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121992856 5273 Angiosperm View MSA
122195770 5267 Panicoideae View MSA
124572616 5269 Grass View MSA
121263182 5274 Embryophyte View MSA
123301768 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.197        
cufflinks 2.411       Low
cufflinks 8.661        
cufflinks 14.838     High  
cufflinks 5.544        
cufflinks 49.309     High High
cufflinks 4.139       Low
cufflinks 5.369        
cufflinks 27.513     High High
cufflinks 32.954     High High
cufflinks 16.351     High  
cufflinks 15.49     High  
cufflinks 19.838     High  
cufflinks 12.173     High  
cufflinks 6.505        
cufflinks 3.916       Low
cufflinks 4.769        
cufflinks 4.441       Low
cufflinks 12.284     High  
cufflinks 9.119        
cufflinks 2.668       Low
cufflinks 13.132     High  
cufflinks 12.452     High  
cufflinks 10.273        
cufflinks 4.097       Low
cufflinks 2.388       Low
cufflinks 14.853     High  
cufflinks 10.257     High  
cufflinks 12.197     High  
cufflinks 4.579        

0 Strain