Gene : Sobic.001G284400 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR10694:SF33 - TRANSCRIPTION FACTOR JUMONJI (JMJ) FAMILY PROTEIN / ZINC FINGER (C5HC2 TYPE) FAMILY PROTEIN Genomic Order:  2990
Name:  ? Sobic.001G284400 Secondary Identifier:  ? PAC:37939443
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G284400 0.5kb upstream 0.5kb upstream 5864 true Chr01: 55681585-55687448 Sorghum bicolor
Sobic.001G284400 0.5kb upstream 0.5kb upstream 500 false Chr01: 55686949-55687448 Sorghum bicolor
Sobic.001G284400 0.5kb downstream 0.5kb downstream 5864 true Chr01: 55681085-55686948 Sorghum bicolor
Sobic.001G284400 0.5kb downstream 0.5kb downstream 500 false Chr01: 55681085-55681584 Sorghum bicolor
Sobic.001G284400 1.0kb upstream 1.0kb upstream 6364 true Chr01: 55681585-55687948 Sorghum bicolor
Sobic.001G284400 1.0kb upstream 1.0kb upstream 1000 false Chr01: 55686949-55687948 Sorghum bicolor
Sobic.001G284400 1.0kb downstream 1.0kb downstream 6364 true Chr01: 55680585-55686948 Sorghum bicolor
Sobic.001G284400 1.0kb downstream 1.0kb downstream 1000 false Chr01: 55680585-55681584 Sorghum bicolor
Sobic.001G284400 2.0kb upstream 2.0kb upstream 7364 true Chr01: 55681585-55688948 Sorghum bicolor
Sobic.001G284400 2.0kb upstream 2.0kb upstream 2000 false Chr01: 55686949-55688948 Sorghum bicolor
Sobic.001G284400 2.0kb downstream 2.0kb downstream 7364 true Chr01: 55679585-55686948 Sorghum bicolor
Sobic.001G284400 2.0kb downstream 2.0kb downstream 2000 false Chr01: 55679585-55681584 Sorghum bicolor
Sobic.001G284400 5.0kb upstream 5.0kb upstream 10364 true Chr01: 55681585-55691948 Sorghum bicolor
Sobic.001G284400 5.0kb upstream 5.0kb upstream 5000 false Chr01: 55686949-55691948 Sorghum bicolor
Sobic.001G284400 5.0kb downstream 5.0kb downstream 10364 true Chr01: 55676585-55686948 Sorghum bicolor
Sobic.001G284400 5.0kb downstream 5.0kb downstream 5000 false Chr01: 55676585-55681584 Sorghum bicolor
Sobic.001G284400 10.0kb upstream 10.0kb upstream 15364 true Chr01: 55681585-55696948 Sorghum bicolor
Sobic.001G284400 10.0kb upstream 10.0kb upstream 10000 false Chr01: 55686949-55696948 Sorghum bicolor
Sobic.001G284400 10.0kb downstream 10.0kb downstream 15364 true Chr01: 55671585-55686948 Sorghum bicolor
Sobic.001G284400 10.0kb downstream 10.0kb downstream 10000 false Chr01: 55671585-55681584 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122182605 5267 Panicoideae View MSA
124577969 5269 Grass View MSA
122042889 5273 Angiosperm View MSA
123428928 5275 Viridiplantae View MSA
121310039 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.631       Low
cufflinks 16.785     High  
cufflinks 71.367     High High
cufflinks 45.897     High High
cufflinks 37.279     High  
cufflinks 21.879     High  
cufflinks 18.052     High  
cufflinks 19.443     High  
cufflinks 7.018       Low
cufflinks 11.395       Low
cufflinks 38.4     High  
cufflinks 22.428     High  
cufflinks 41.735     High  
cufflinks 19.063     High  
cufflinks 33.853     High  
cufflinks 10.084     High Low
cufflinks 13.862     High  
cufflinks 17.048     High  
cufflinks 39.008     High  
cufflinks 10.407       Low
cufflinks 13.825        
cufflinks 16.624     High  
cufflinks 17.46     High  
cufflinks 18.854     High  
cufflinks 21.251     High  
cufflinks 24.585     High  
cufflinks 67.017     High High
cufflinks 6.989       Low
cufflinks 25.519     High  
cufflinks 27.322     High  

0 Strain