Gene : Sobic.001G280500 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR10774//PTHR10774:SF95 - EXTENDED SYNAPTOTAGMIN-RELATED // SUBFAMILY NOT NAMED Genomic Order:  2954
Name:  ? Sobic.001G280500 Secondary Identifier:  ? PAC:37940739
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G280500 0.5kb upstream 0.5kb upstream 5374 true Chr01: 54948534-54953907 Sorghum bicolor
Sobic.001G280500 0.5kb upstream 0.5kb upstream 500 false Chr01: 54948534-54949033 Sorghum bicolor
Sobic.001G280500 0.5kb downstream 0.5kb downstream 5374 true Chr01: 54949034-54954407 Sorghum bicolor
Sobic.001G280500 0.5kb downstream 0.5kb downstream 500 false Chr01: 54953908-54954407 Sorghum bicolor
Sobic.001G280500 1.0kb upstream 1.0kb upstream 5874 true Chr01: 54948034-54953907 Sorghum bicolor
Sobic.001G280500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 54948034-54949033 Sorghum bicolor
Sobic.001G280500 1.0kb downstream 1.0kb downstream 5874 true Chr01: 54949034-54954907 Sorghum bicolor
Sobic.001G280500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 54953908-54954907 Sorghum bicolor
Sobic.001G280500 2.0kb upstream 2.0kb upstream 6874 true Chr01: 54947034-54953907 Sorghum bicolor
Sobic.001G280500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 54947034-54949033 Sorghum bicolor
Sobic.001G280500 2.0kb downstream 2.0kb downstream 6874 true Chr01: 54949034-54955907 Sorghum bicolor
Sobic.001G280500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 54953908-54955907 Sorghum bicolor
Sobic.001G280500 5.0kb upstream 5.0kb upstream 9874 true Chr01: 54944034-54953907 Sorghum bicolor
Sobic.001G280500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 54944034-54949033 Sorghum bicolor
Sobic.001G280500 5.0kb downstream 5.0kb downstream 9874 true Chr01: 54949034-54958907 Sorghum bicolor
Sobic.001G280500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 54953908-54958907 Sorghum bicolor
Sobic.001G280500 10.0kb upstream 10.0kb upstream 14874 true Chr01: 54939034-54953907 Sorghum bicolor
Sobic.001G280500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 54939034-54949033 Sorghum bicolor
Sobic.001G280500 10.0kb downstream 10.0kb downstream 14874 true Chr01: 54949034-54963907 Sorghum bicolor
Sobic.001G280500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 54953908-54963907 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122178662 5267 Panicoideae View MSA
124581665 5269 Grass View MSA
122042334 5273 Angiosperm View MSA
121345597 5274 Embryophyte View MSA
123428781 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.001        
cufflinks 1.697       Low
cufflinks 3.372        
cufflinks 3.833        
cufflinks 4.425        
cufflinks 4.211        
cufflinks 2.652        
cufflinks 1.583       Low
cufflinks 4.775        
cufflinks 5.026        
cufflinks 4.404        
cufflinks 4.338        
cufflinks 4.27        
cufflinks 4.579        
cufflinks 7.376       High
cufflinks 2.841        
cufflinks 2.204       Low
cufflinks 2.747        
cufflinks 2.699        
cufflinks 3.155        
cufflinks 4.732        
cufflinks 5.114        
cufflinks 4.627        
cufflinks 4.255        
cufflinks 2.944        
cufflinks 1.566       Low
cufflinks 4.813        
cufflinks 4.356        
cufflinks 2.838        
cufflinks 6.843       High

0 Strain