Gene : Sobic.005G088500 S. bicolor v3.1.1
Defline:  (1 of 59) PF00892 - EamA-like transporter family (EamA) Genomic Order:  910
Name:  ? Sobic.005G088500 Secondary Identifier:  ? PAC:37925244
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.005G088500 0.5kb upstream 0.5kb upstream 3663 true Chr05: 12638268-12641930 Sorghum bicolor
Sobic.005G088500 0.5kb upstream 0.5kb upstream 500 false Chr05: 12641431-12641930 Sorghum bicolor
Sobic.005G088500 0.5kb downstream 0.5kb downstream 3663 true Chr05: 12637768-12641430 Sorghum bicolor
Sobic.005G088500 0.5kb downstream 0.5kb downstream 500 false Chr05: 12637768-12638267 Sorghum bicolor
Sobic.005G088500 1.0kb upstream 1.0kb upstream 4163 true Chr05: 12638268-12642430 Sorghum bicolor
Sobic.005G088500 1.0kb upstream 1.0kb upstream 1000 false Chr05: 12641431-12642430 Sorghum bicolor
Sobic.005G088500 1.0kb downstream 1.0kb downstream 4163 true Chr05: 12637268-12641430 Sorghum bicolor
Sobic.005G088500 1.0kb downstream 1.0kb downstream 1000 false Chr05: 12637268-12638267 Sorghum bicolor
Sobic.005G088500 2.0kb upstream 2.0kb upstream 5163 true Chr05: 12638268-12643430 Sorghum bicolor
Sobic.005G088500 2.0kb upstream 2.0kb upstream 2000 false Chr05: 12641431-12643430 Sorghum bicolor
Sobic.005G088500 2.0kb downstream 2.0kb downstream 5163 true Chr05: 12636268-12641430 Sorghum bicolor
Sobic.005G088500 2.0kb downstream 2.0kb downstream 2000 false Chr05: 12636268-12638267 Sorghum bicolor
Sobic.005G088500 5.0kb upstream 5.0kb upstream 8163 true Chr05: 12638268-12646430 Sorghum bicolor
Sobic.005G088500 5.0kb upstream 5.0kb upstream 5000 false Chr05: 12641431-12646430 Sorghum bicolor
Sobic.005G088500 5.0kb downstream 5.0kb downstream 8163 true Chr05: 12633268-12641430 Sorghum bicolor
Sobic.005G088500 5.0kb downstream 5.0kb downstream 5000 false Chr05: 12633268-12638267 Sorghum bicolor
Sobic.005G088500 10.0kb upstream 10.0kb upstream 13163 true Chr05: 12638268-12651430 Sorghum bicolor
Sobic.005G088500 10.0kb upstream 10.0kb upstream 10000 false Chr05: 12641431-12651430 Sorghum bicolor
Sobic.005G088500 10.0kb downstream 10.0kb downstream 13163 true Chr05: 12628268-12641430 Sorghum bicolor
Sobic.005G088500 10.0kb downstream 10.0kb downstream 10000 false Chr05: 12628268-12638267 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026670 5273 Angiosperm View MSA
122177451 5267 Panicoideae View MSA
124575805 5269 Grass View MSA
121296466 5274 Embryophyte View MSA
123334621 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.106        
cufflinks 0.499        
cufflinks 0.466        
cufflinks 0.006     Low Low
cufflinks 0.04     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.013     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 3.297       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.581        
cufflinks 0.53        
cufflinks 0.008     Low Low
cufflinks 0.79        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.005     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.144       High
cufflinks 2.576       High

0 Strain