Gene : Sobic.001G255800 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR12897 - COLON CANCER-ASSOCIATED PROTEIN MIC1 Genomic Order:  2655
Name:  ? Sobic.001G255800 Secondary Identifier:  ? PAC:37942085
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G255800 0.5kb upstream 0.5kb upstream 8331 true Chr01: 29431261-29439591 Sorghum bicolor
Sobic.001G255800 0.5kb upstream 0.5kb upstream 500 false Chr01: 29439092-29439591 Sorghum bicolor
Sobic.001G255800 0.5kb downstream 0.5kb downstream 8331 true Chr01: 29430761-29439091 Sorghum bicolor
Sobic.001G255800 0.5kb downstream 0.5kb downstream 500 false Chr01: 29430761-29431260 Sorghum bicolor
Sobic.001G255800 1.0kb upstream 1.0kb upstream 8831 true Chr01: 29431261-29440091 Sorghum bicolor
Sobic.001G255800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 29439092-29440091 Sorghum bicolor
Sobic.001G255800 1.0kb downstream 1.0kb downstream 8831 true Chr01: 29430261-29439091 Sorghum bicolor
Sobic.001G255800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 29430261-29431260 Sorghum bicolor
Sobic.001G255800 2.0kb upstream 2.0kb upstream 9831 true Chr01: 29431261-29441091 Sorghum bicolor
Sobic.001G255800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 29439092-29441091 Sorghum bicolor
Sobic.001G255800 2.0kb downstream 2.0kb downstream 9831 true Chr01: 29429261-29439091 Sorghum bicolor
Sobic.001G255800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 29429261-29431260 Sorghum bicolor
Sobic.001G255800 5.0kb upstream 5.0kb upstream 12831 true Chr01: 29431261-29444091 Sorghum bicolor
Sobic.001G255800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 29439092-29444091 Sorghum bicolor
Sobic.001G255800 5.0kb downstream 5.0kb downstream 12831 true Chr01: 29426261-29439091 Sorghum bicolor
Sobic.001G255800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 29426261-29431260 Sorghum bicolor
Sobic.001G255800 10.0kb upstream 10.0kb upstream 17831 true Chr01: 29431261-29449091 Sorghum bicolor
Sobic.001G255800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 29439092-29449091 Sorghum bicolor
Sobic.001G255800 10.0kb downstream 10.0kb downstream 17831 true Chr01: 29421261-29439091 Sorghum bicolor
Sobic.001G255800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 29421261-29431260 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179475 5267 Panicoideae View MSA
124578032 5269 Grass View MSA
122048416 5273 Angiosperm View MSA
121348965 5274 Embryophyte View MSA
123424129 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.05        
cufflinks 4.122       Low
cufflinks 8.044        
cufflinks 8.642        
cufflinks 15.444     High  
cufflinks 9.709        
cufflinks 10.635        
cufflinks 6.063       Low
cufflinks 17.93     High High
cufflinks 18.638     High High
cufflinks 12.571     High  
cufflinks 17.066     High High
cufflinks 14.421     High  
cufflinks 13.875     High  
cufflinks 12.431     High  
cufflinks 5.705       Low
cufflinks 10.064        
cufflinks 10.681        
cufflinks 6.01       Low
cufflinks 11.126        
cufflinks 19.081     High High
cufflinks 12.538     High  
cufflinks 15.005     High  
cufflinks 15.225     High  
cufflinks 7.647        
cufflinks 4.569       Low
cufflinks 13.761     High  
cufflinks 4.862       Low
cufflinks 8.438        
cufflinks 13.475     High  

0 Strain