Gene : Sobic.001G249400 S. bicolor v3.1.1
Defline:  (1 of 1) 2.1.1.198 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase Genomic Order:  2586
Name:  ? Sobic.001G249400 Secondary Identifier:  ? PAC:37941941
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G249400 0.5kb upstream 0.5kb upstream 5329 true Chr01: 26901179-26906507 Sorghum bicolor
Sobic.001G249400 0.5kb upstream 0.5kb upstream 500 false Chr01: 26901179-26901678 Sorghum bicolor
Sobic.001G249400 0.5kb downstream 0.5kb downstream 5329 true Chr01: 26901679-26907007 Sorghum bicolor
Sobic.001G249400 0.5kb downstream 0.5kb downstream 500 false Chr01: 26906508-26907007 Sorghum bicolor
Sobic.001G249400 1.0kb upstream 1.0kb upstream 5829 true Chr01: 26900679-26906507 Sorghum bicolor
Sobic.001G249400 1.0kb upstream 1.0kb upstream 1000 false Chr01: 26900679-26901678 Sorghum bicolor
Sobic.001G249400 1.0kb downstream 1.0kb downstream 5829 true Chr01: 26901679-26907507 Sorghum bicolor
Sobic.001G249400 1.0kb downstream 1.0kb downstream 1000 false Chr01: 26906508-26907507 Sorghum bicolor
Sobic.001G249400 2.0kb upstream 2.0kb upstream 6829 true Chr01: 26899679-26906507 Sorghum bicolor
Sobic.001G249400 2.0kb upstream 2.0kb upstream 2000 false Chr01: 26899679-26901678 Sorghum bicolor
Sobic.001G249400 2.0kb downstream 2.0kb downstream 6829 true Chr01: 26901679-26908507 Sorghum bicolor
Sobic.001G249400 2.0kb downstream 2.0kb downstream 2000 false Chr01: 26906508-26908507 Sorghum bicolor
Sobic.001G249400 5.0kb upstream 5.0kb upstream 9829 true Chr01: 26896679-26906507 Sorghum bicolor
Sobic.001G249400 5.0kb upstream 5.0kb upstream 5000 false Chr01: 26896679-26901678 Sorghum bicolor
Sobic.001G249400 5.0kb downstream 5.0kb downstream 9829 true Chr01: 26901679-26911507 Sorghum bicolor
Sobic.001G249400 5.0kb downstream 5.0kb downstream 5000 false Chr01: 26906508-26911507 Sorghum bicolor
Sobic.001G249400 10.0kb upstream 10.0kb upstream 14829 true Chr01: 26891679-26906507 Sorghum bicolor
Sobic.001G249400 10.0kb upstream 10.0kb upstream 10000 false Chr01: 26891679-26901678 Sorghum bicolor
Sobic.001G249400 10.0kb downstream 10.0kb downstream 14829 true Chr01: 26901679-26916507 Sorghum bicolor
Sobic.001G249400 10.0kb downstream 10.0kb downstream 10000 false Chr01: 26906508-26916507 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122183912 5267 Panicoideae View MSA
124569923 5269 Grass View MSA
122043278 5273 Angiosperm View MSA
121347213 5274 Embryophyte View MSA
123424563 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.792        
cufflinks 1.539        
cufflinks 1.389        
cufflinks 1.598       High
cufflinks 1.004        
cufflinks 1.878       High
cufflinks 1.33        
cufflinks 1.778       High
cufflinks 1.265        
cufflinks 1.244        
cufflinks 0.697        
cufflinks 0.798        
cufflinks 1.045        
cufflinks 0.726        
cufflinks 0.991        
cufflinks 1.31        
cufflinks 1.369        
cufflinks 1.691       High
cufflinks 1.064        
cufflinks 1.129        
cufflinks 1.588        
cufflinks 0.821        
cufflinks 0.753        
cufflinks 0.709        
cufflinks 0.992        
cufflinks 1.381        
cufflinks 0.876        
cufflinks 0.199       Low
cufflinks 2.512       High
cufflinks 1.155        

0 Strain