Gene : Sobic.001G243200 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR23418:SF4 - 1,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4 Genomic Order:  2520
Name:  ? Sobic.001G243200 Secondary Identifier:  ? PAC:37942267
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4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-4361 Sorghum bicolor pathologic  
Sbicolor PWY-5389 Sorghum bicolor pathologic  
Sbicolor PWY-7270 Sorghum bicolor pathologic  
Sbicolor PWY-7528 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G243200 0.5kb upstream 0.5kb upstream 2891 true Chr01: 25142274-25145164 Sorghum bicolor
Sobic.001G243200 0.5kb upstream 0.5kb upstream 500 false Chr01: 25144665-25145164 Sorghum bicolor
Sobic.001G243200 0.5kb downstream 0.5kb downstream 2891 true Chr01: 25141774-25144664 Sorghum bicolor
Sobic.001G243200 0.5kb downstream 0.5kb downstream 500 false Chr01: 25141774-25142273 Sorghum bicolor
Sobic.001G243200 1.0kb upstream 1.0kb upstream 3391 true Chr01: 25142274-25145664 Sorghum bicolor
Sobic.001G243200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 25144665-25145664 Sorghum bicolor
Sobic.001G243200 1.0kb downstream 1.0kb downstream 3391 true Chr01: 25141274-25144664 Sorghum bicolor
Sobic.001G243200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 25141274-25142273 Sorghum bicolor
Sobic.001G243200 2.0kb upstream 2.0kb upstream 4391 true Chr01: 25142274-25146664 Sorghum bicolor
Sobic.001G243200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 25144665-25146664 Sorghum bicolor
Sobic.001G243200 2.0kb downstream 2.0kb downstream 4391 true Chr01: 25140274-25144664 Sorghum bicolor
Sobic.001G243200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 25140274-25142273 Sorghum bicolor
Sobic.001G243200 5.0kb upstream 5.0kb upstream 7391 true Chr01: 25142274-25149664 Sorghum bicolor
Sobic.001G243200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 25144665-25149664 Sorghum bicolor
Sobic.001G243200 5.0kb downstream 5.0kb downstream 7391 true Chr01: 25137274-25144664 Sorghum bicolor
Sobic.001G243200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 25137274-25142273 Sorghum bicolor
Sobic.001G243200 10.0kb upstream 10.0kb upstream 12391 true Chr01: 25142274-25154664 Sorghum bicolor
Sobic.001G243200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 25144665-25154664 Sorghum bicolor
Sobic.001G243200 10.0kb downstream 10.0kb downstream 12391 true Chr01: 25132274-25144664 Sorghum bicolor
Sobic.001G243200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 25132274-25142273 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180959 5267 Panicoideae View MSA
124572378 5269 Grass View MSA
122046510 5273 Angiosperm View MSA
121343851 5274 Embryophyte View MSA
123424670 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 34.316     High  
cufflinks 31.144     High  
cufflinks 92.103     High High
cufflinks 109.064     High High
cufflinks 9.197       Low
cufflinks 35.353     High  
cufflinks 23.74     High  
cufflinks 23.535     High  
cufflinks 43.811     High  
cufflinks 47.601     High High
cufflinks 13.467     High  
cufflinks 23.845     High  
cufflinks 26.487     High  
cufflinks 21.783     High  
cufflinks 30.435     High  
cufflinks 79.964     High High
cufflinks 26.735     High  
cufflinks 26.112     High  
cufflinks 36.321     High  
cufflinks 63.625     High High
cufflinks 6.829       Low
cufflinks 12.765     High  
cufflinks 17.61     High  
cufflinks 15.992     High  
cufflinks 42.877     High  
cufflinks 28.233     High  
cufflinks 26.742     High  
cufflinks 49.78     High High
cufflinks 22.077     High  
cufflinks 25.125     High  

0 Strain