Gene : Sobic.001G243100 S. bicolor v3.1.1
Defline:  (1 of 3) 1.13.11.53 - Acireductone dioxygenase (Ni(2+)-requiring) / E-2 Genomic Order:  2518
Name:  ? Sobic.001G243100 Secondary Identifier:  ? PAC:37945264
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-4361 Sorghum bicolor pathologic  
Sbicolor PWY-5389 Sorghum bicolor pathologic  
Sbicolor PWY-7270 Sorghum bicolor pathologic  
Sbicolor PWY-7528 Sorghum bicolor pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G243100 0.5kb upstream 0.5kb upstream 7643 true Chr01: 25132725-25140367 Sorghum bicolor
Sobic.001G243100 0.5kb upstream 0.5kb upstream 500 false Chr01: 25139868-25140367 Sorghum bicolor
Sobic.001G243100 0.5kb downstream 0.5kb downstream 7643 true Chr01: 25132225-25139867 Sorghum bicolor
Sobic.001G243100 0.5kb downstream 0.5kb downstream 500 false Chr01: 25132225-25132724 Sorghum bicolor
Sobic.001G243100 1.0kb upstream 1.0kb upstream 8143 true Chr01: 25132725-25140867 Sorghum bicolor
Sobic.001G243100 1.0kb upstream 1.0kb upstream 1000 false Chr01: 25139868-25140867 Sorghum bicolor
Sobic.001G243100 1.0kb downstream 1.0kb downstream 8143 true Chr01: 25131725-25139867 Sorghum bicolor
Sobic.001G243100 1.0kb downstream 1.0kb downstream 1000 false Chr01: 25131725-25132724 Sorghum bicolor
Sobic.001G243100 2.0kb upstream 2.0kb upstream 9143 true Chr01: 25132725-25141867 Sorghum bicolor
Sobic.001G243100 2.0kb upstream 2.0kb upstream 2000 false Chr01: 25139868-25141867 Sorghum bicolor
Sobic.001G243100 2.0kb downstream 2.0kb downstream 9143 true Chr01: 25130725-25139867 Sorghum bicolor
Sobic.001G243100 2.0kb downstream 2.0kb downstream 2000 false Chr01: 25130725-25132724 Sorghum bicolor
Sobic.001G243100 5.0kb upstream 5.0kb upstream 12143 true Chr01: 25132725-25144867 Sorghum bicolor
Sobic.001G243100 5.0kb upstream 5.0kb upstream 5000 false Chr01: 25139868-25144867 Sorghum bicolor
Sobic.001G243100 5.0kb downstream 5.0kb downstream 12143 true Chr01: 25127725-25139867 Sorghum bicolor
Sobic.001G243100 5.0kb downstream 5.0kb downstream 5000 false Chr01: 25127725-25132724 Sorghum bicolor
Sobic.001G243100 10.0kb upstream 10.0kb upstream 17143 true Chr01: 25132725-25149867 Sorghum bicolor
Sobic.001G243100 10.0kb upstream 10.0kb upstream 10000 false Chr01: 25139868-25149867 Sorghum bicolor
Sobic.001G243100 10.0kb downstream 10.0kb downstream 17143 true Chr01: 25122725-25139867 Sorghum bicolor
Sobic.001G243100 10.0kb downstream 10.0kb downstream 10000 false Chr01: 25122725-25132724 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179204 5267 Panicoideae View MSA
124465520 5269 Grass View MSA
122046510 5273 Angiosperm View MSA
121343851 5274 Embryophyte View MSA
123424670 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.829     High  
cufflinks 22.718     High  
cufflinks 38.214     High High
cufflinks 44.658     High High
cufflinks 17.207     High  
cufflinks 13.541     High Low
cufflinks 23.236     High  
cufflinks 15.831     High Low
cufflinks 26.606     High  
cufflinks 37.22     High High
cufflinks 30.502     High  
cufflinks 26.125     High  
cufflinks 22.673     High  
cufflinks 58.29     High High
cufflinks 29.747     High  
cufflinks 38.715     High High
cufflinks 24.828     High  
cufflinks 25.983     High  
cufflinks 19.144     High  
cufflinks 29.494     High  
cufflinks 15.641     High Low
cufflinks 26.623     High  
cufflinks 33.533     High  
cufflinks 34.159     High  
cufflinks 20.386     High  
cufflinks 24.134     High  
cufflinks 34.533     High  
cufflinks 38.333     High High
cufflinks 15.173     High Low
cufflinks 23.35     High  

0 Strain