Gene : Sobic.001G230200 S. bicolor v3.1.1
Defline:  (1 of 1) K01519 - inosine triphosphate pyrophosphatase (ITPA) Genomic Order:  2388
Name:  ? Sobic.001G230200 Secondary Identifier:  ? PAC:37940855
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-6545 Sorghum bicolor pathologic  
Sbicolor PWY-7184 Sorghum bicolor pathologic  
Sbicolor PWY-7206 Sorghum bicolor pathologic  
Sbicolor PWY-7211 Sorghum bicolor pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G230200 0.5kb upstream 0.5kb upstream 3600 true Chr01: 22247574-22251173 Sorghum bicolor
Sobic.001G230200 0.5kb upstream 0.5kb upstream 500 false Chr01: 22247574-22248073 Sorghum bicolor
Sobic.001G230200 0.5kb downstream 0.5kb downstream 3600 true Chr01: 22248074-22251673 Sorghum bicolor
Sobic.001G230200 0.5kb downstream 0.5kb downstream 500 false Chr01: 22251174-22251673 Sorghum bicolor
Sobic.001G230200 1.0kb upstream 1.0kb upstream 4100 true Chr01: 22247074-22251173 Sorghum bicolor
Sobic.001G230200 1.0kb upstream 1.0kb upstream 1000 false Chr01: 22247074-22248073 Sorghum bicolor
Sobic.001G230200 1.0kb downstream 1.0kb downstream 4100 true Chr01: 22248074-22252173 Sorghum bicolor
Sobic.001G230200 1.0kb downstream 1.0kb downstream 1000 false Chr01: 22251174-22252173 Sorghum bicolor
Sobic.001G230200 2.0kb upstream 2.0kb upstream 5100 true Chr01: 22246074-22251173 Sorghum bicolor
Sobic.001G230200 2.0kb upstream 2.0kb upstream 2000 false Chr01: 22246074-22248073 Sorghum bicolor
Sobic.001G230200 2.0kb downstream 2.0kb downstream 5100 true Chr01: 22248074-22253173 Sorghum bicolor
Sobic.001G230200 2.0kb downstream 2.0kb downstream 2000 false Chr01: 22251174-22253173 Sorghum bicolor
Sobic.001G230200 5.0kb upstream 5.0kb upstream 8100 true Chr01: 22243074-22251173 Sorghum bicolor
Sobic.001G230200 5.0kb upstream 5.0kb upstream 5000 false Chr01: 22243074-22248073 Sorghum bicolor
Sobic.001G230200 5.0kb downstream 5.0kb downstream 8100 true Chr01: 22248074-22256173 Sorghum bicolor
Sobic.001G230200 5.0kb downstream 5.0kb downstream 5000 false Chr01: 22251174-22256173 Sorghum bicolor
Sobic.001G230200 10.0kb upstream 10.0kb upstream 13100 true Chr01: 22238074-22251173 Sorghum bicolor
Sobic.001G230200 10.0kb upstream 10.0kb upstream 10000 false Chr01: 22238074-22248073 Sorghum bicolor
Sobic.001G230200 10.0kb downstream 10.0kb downstream 13100 true Chr01: 22248074-22261173 Sorghum bicolor
Sobic.001G230200 10.0kb downstream 10.0kb downstream 10000 false Chr01: 22251174-22261173 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122179578 5267 Panicoideae View MSA
124580947 5269 Grass View MSA
122044439 5273 Angiosperm View MSA
121346203 5274 Embryophyte View MSA
123426243 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.123       High
cufflinks 0.422       Low
cufflinks 2.295        
cufflinks 6.283       High
cufflinks 4.472        
cufflinks 3.332        
cufflinks 3.11        
cufflinks 1.027       Low
cufflinks 5.294        
cufflinks 5.075        
cufflinks 2.915        
cufflinks 2.656        
cufflinks 2.935        
cufflinks 2.259        
cufflinks 2.612        
cufflinks 1.186       Low
cufflinks 2.934        
cufflinks 3.638        
cufflinks 0.717       Low
cufflinks 2.665        
cufflinks 7.179       High
cufflinks 3.877        
cufflinks 3.064        
cufflinks 3.118        
cufflinks 0.692       Low
cufflinks 0.401       Low
cufflinks 3.955        
cufflinks 6.578       High
cufflinks 4.322        
cufflinks 4.318        

0 Strain