Gene : Sobic.005G026500 S. bicolor v3.1.1
Defline:  (1 of 18) PF12854//PF13041 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  256
Name:  ? Sobic.005G026500 Secondary Identifier:  ? PAC:37924612
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.005G026500 0.5kb upstream 0.5kb upstream 5425 true Chr05: 2377980-2383404 Sorghum bicolor
Sobic.005G026500 0.5kb upstream 0.5kb upstream 500 false Chr05: 2382905-2383404 Sorghum bicolor
Sobic.005G026500 0.5kb downstream 0.5kb downstream 5425 true Chr05: 2377480-2382904 Sorghum bicolor
Sobic.005G026500 0.5kb downstream 0.5kb downstream 500 false Chr05: 2377480-2377979 Sorghum bicolor
Sobic.005G026500 1.0kb upstream 1.0kb upstream 5925 true Chr05: 2377980-2383904 Sorghum bicolor
Sobic.005G026500 1.0kb upstream 1.0kb upstream 1000 false Chr05: 2382905-2383904 Sorghum bicolor
Sobic.005G026500 1.0kb downstream 1.0kb downstream 5925 true Chr05: 2376980-2382904 Sorghum bicolor
Sobic.005G026500 1.0kb downstream 1.0kb downstream 1000 false Chr05: 2376980-2377979 Sorghum bicolor
Sobic.005G026500 2.0kb upstream 2.0kb upstream 6925 true Chr05: 2377980-2384904 Sorghum bicolor
Sobic.005G026500 2.0kb upstream 2.0kb upstream 2000 false Chr05: 2382905-2384904 Sorghum bicolor
Sobic.005G026500 2.0kb downstream 2.0kb downstream 6925 true Chr05: 2375980-2382904 Sorghum bicolor
Sobic.005G026500 2.0kb downstream 2.0kb downstream 2000 false Chr05: 2375980-2377979 Sorghum bicolor
Sobic.005G026500 5.0kb upstream 5.0kb upstream 9925 true Chr05: 2377980-2387904 Sorghum bicolor
Sobic.005G026500 5.0kb upstream 5.0kb upstream 5000 false Chr05: 2382905-2387904 Sorghum bicolor
Sobic.005G026500 5.0kb downstream 5.0kb downstream 9925 true Chr05: 2372980-2382904 Sorghum bicolor
Sobic.005G026500 5.0kb downstream 5.0kb downstream 5000 false Chr05: 2372980-2377979 Sorghum bicolor
Sobic.005G026500 10.0kb upstream 10.0kb upstream 14925 true Chr05: 2377980-2392904 Sorghum bicolor
Sobic.005G026500 10.0kb upstream 10.0kb upstream 10000 false Chr05: 2382905-2392904 Sorghum bicolor
Sobic.005G026500 10.0kb downstream 10.0kb downstream 14925 true Chr05: 2367980-2382904 Sorghum bicolor
Sobic.005G026500 10.0kb downstream 10.0kb downstream 10000 false Chr05: 2367980-2377979 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122198467 5267 Panicoideae View MSA
124590904 5269 Grass View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.036     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.015     Low  
cufflinks 0.014     Low  
cufflinks 0.238       High
cufflinks 0.032     Low  
cufflinks 0.053     Low  
cufflinks 0.005     Low Low
cufflinks 0.086        
cufflinks 0.094        
cufflinks 0.012     Low  
cufflinks 0.054     Low  
cufflinks 0.07     Low  
cufflinks 0.022     Low  
cufflinks 0.064     Low  
cufflinks 0.026     Low  
cufflinks 0.026     Low  
cufflinks 0.057     Low  
cufflinks 0.01     Low Low
cufflinks 0.02     Low  
cufflinks 0.317       High
cufflinks 0.042     Low  
cufflinks 0.047     Low  
cufflinks 0.022     Low  
cufflinks 0.008     Low Low
cufflinks 0.003     Low Low
cufflinks 0.038     Low  
cufflinks 0.009     Low Low
cufflinks 0.02     Low  
cufflinks 0.071     Low  

0 Strain