Gene : Sobic.005G030600 S. bicolor v3.1.1
Defline:  (1 of 2) PTHR10535//PTHR10535:SF2 - DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1 // DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A-RELATED Genomic Order:  304
Name:  ? Sobic.005G030600 Secondary Identifier:  ? PAC:37925612
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.005G030600 0.5kb upstream 0.5kb upstream 4076 true Chr05: 2743245-2747320 Sorghum bicolor
Sobic.005G030600 0.5kb upstream 0.5kb upstream 500 false Chr05: 2746821-2747320 Sorghum bicolor
Sobic.005G030600 0.5kb downstream 0.5kb downstream 4076 true Chr05: 2742745-2746820 Sorghum bicolor
Sobic.005G030600 0.5kb downstream 0.5kb downstream 500 false Chr05: 2742745-2743244 Sorghum bicolor
Sobic.005G030600 1.0kb upstream 1.0kb upstream 4576 true Chr05: 2743245-2747820 Sorghum bicolor
Sobic.005G030600 1.0kb upstream 1.0kb upstream 1000 false Chr05: 2746821-2747820 Sorghum bicolor
Sobic.005G030600 1.0kb downstream 1.0kb downstream 4576 true Chr05: 2742245-2746820 Sorghum bicolor
Sobic.005G030600 1.0kb downstream 1.0kb downstream 1000 false Chr05: 2742245-2743244 Sorghum bicolor
Sobic.005G030600 2.0kb upstream 2.0kb upstream 5576 true Chr05: 2743245-2748820 Sorghum bicolor
Sobic.005G030600 2.0kb upstream 2.0kb upstream 2000 false Chr05: 2746821-2748820 Sorghum bicolor
Sobic.005G030600 2.0kb downstream 2.0kb downstream 5576 true Chr05: 2741245-2746820 Sorghum bicolor
Sobic.005G030600 2.0kb downstream 2.0kb downstream 2000 false Chr05: 2741245-2743244 Sorghum bicolor
Sobic.005G030600 5.0kb upstream 5.0kb upstream 8576 true Chr05: 2743245-2751820 Sorghum bicolor
Sobic.005G030600 5.0kb upstream 5.0kb upstream 5000 false Chr05: 2746821-2751820 Sorghum bicolor
Sobic.005G030600 5.0kb downstream 5.0kb downstream 8576 true Chr05: 2738245-2746820 Sorghum bicolor
Sobic.005G030600 5.0kb downstream 5.0kb downstream 5000 false Chr05: 2738245-2743244 Sorghum bicolor
Sobic.005G030600 10.0kb upstream 10.0kb upstream 13576 true Chr05: 2743245-2756820 Sorghum bicolor
Sobic.005G030600 10.0kb upstream 10.0kb upstream 10000 false Chr05: 2746821-2756820 Sorghum bicolor
Sobic.005G030600 10.0kb downstream 10.0kb downstream 13576 true Chr05: 2733245-2746820 Sorghum bicolor
Sobic.005G030600 10.0kb downstream 10.0kb downstream 10000 false Chr05: 2733245-2743244 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122181058 5267 Panicoideae View MSA
124581114 5269 Grass View MSA
122051300 5273 Angiosperm View MSA
121352511 5274 Embryophyte View MSA
123382830 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.788     High High
cufflinks 0.265       Low
cufflinks 0.562       Low
cufflinks 1.378        
cufflinks 4.165        
cufflinks 1.556        
cufflinks 2.08        
cufflinks 0.57       Low
cufflinks 2.507        
cufflinks 3.205        
cufflinks 3.135        
cufflinks 2.836        
cufflinks 1.763        
cufflinks 2.982        
cufflinks 2.691        
cufflinks 0.469       Low
cufflinks 1.975        
cufflinks 2.361        
cufflinks 0.467       Low
cufflinks 2.038        
cufflinks 11.279       High
cufflinks 3.89        
cufflinks 3.223        
cufflinks 3.151        
cufflinks 0.359       Low
cufflinks 0.266       Low
cufflinks 2.648        
cufflinks 6.47       High
cufflinks 1.842        
cufflinks 6.078       High

0 Strain