Gene : Sobic.005G030850 S. bicolor v3.1.1
Defline:  (1 of 30) PF01535//PF12854//PF13041 - PPR repeat (PPR) // PPR repeat (PPR_1) // PPR repeat family (PPR_2) Genomic Order:  306
Name:  ? Sobic.005G030850 Secondary Identifier:  ? PAC:37923636
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.005G030850 0.5kb upstream 0.5kb upstream 9491 true Chr05: 2756943-2766433 Sorghum bicolor
Sobic.005G030850 0.5kb upstream 0.5kb upstream 500 false Chr05: 2765934-2766433 Sorghum bicolor
Sobic.005G030850 0.5kb downstream 0.5kb downstream 9491 true Chr05: 2756443-2765933 Sorghum bicolor
Sobic.005G030850 0.5kb downstream 0.5kb downstream 500 false Chr05: 2756443-2756942 Sorghum bicolor
Sobic.005G030850 1.0kb upstream 1.0kb upstream 9991 true Chr05: 2756943-2766933 Sorghum bicolor
Sobic.005G030850 1.0kb upstream 1.0kb upstream 1000 false Chr05: 2765934-2766933 Sorghum bicolor
Sobic.005G030850 1.0kb downstream 1.0kb downstream 9991 true Chr05: 2755943-2765933 Sorghum bicolor
Sobic.005G030850 1.0kb downstream 1.0kb downstream 1000 false Chr05: 2755943-2756942 Sorghum bicolor
Sobic.005G030850 2.0kb upstream 2.0kb upstream 10991 true Chr05: 2756943-2767933 Sorghum bicolor
Sobic.005G030850 2.0kb upstream 2.0kb upstream 2000 false Chr05: 2765934-2767933 Sorghum bicolor
Sobic.005G030850 2.0kb downstream 2.0kb downstream 10991 true Chr05: 2754943-2765933 Sorghum bicolor
Sobic.005G030850 2.0kb downstream 2.0kb downstream 2000 false Chr05: 2754943-2756942 Sorghum bicolor
Sobic.005G030850 5.0kb upstream 5.0kb upstream 13991 true Chr05: 2756943-2770933 Sorghum bicolor
Sobic.005G030850 5.0kb upstream 5.0kb upstream 5000 false Chr05: 2765934-2770933 Sorghum bicolor
Sobic.005G030850 5.0kb downstream 5.0kb downstream 13991 true Chr05: 2751943-2765933 Sorghum bicolor
Sobic.005G030850 5.0kb downstream 5.0kb downstream 5000 false Chr05: 2751943-2756942 Sorghum bicolor
Sobic.005G030850 10.0kb upstream 10.0kb upstream 18991 true Chr05: 2756943-2775933 Sorghum bicolor
Sobic.005G030850 10.0kb upstream 10.0kb upstream 10000 false Chr05: 2765934-2775933 Sorghum bicolor
Sobic.005G030850 10.0kb downstream 10.0kb downstream 18991 true Chr05: 2746943-2765933 Sorghum bicolor
Sobic.005G030850 10.0kb downstream 10.0kb downstream 10000 false Chr05: 2746943-2756942 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122174032 5267 Panicoideae View MSA
124464631 5269 Grass View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.254        
cufflinks 0.096       Low
cufflinks 0.176       Low
cufflinks 0.176       Low
cufflinks 1.013       High
cufflinks 0.36        
cufflinks 0.411        
cufflinks 0.181       Low
cufflinks 0.545        
cufflinks 0.564        
cufflinks 0.281        
cufflinks 0.587        
cufflinks 0.454        
cufflinks 0.399        
cufflinks 0.548        
cufflinks 0.181       Low
cufflinks 0.322        
cufflinks 0.427        
cufflinks 0.148       Low
cufflinks 0.376        
cufflinks 2.129       High
cufflinks 0.329        
cufflinks 0.378        
cufflinks 0.431        
cufflinks 0.193        
cufflinks 0.143       Low
cufflinks 0.421        
cufflinks 0.131       Low
cufflinks 0.231        
cufflinks 0.61        

0 Strain