Gene : Sobic.001G335900 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR14190:SF7 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 52 HOMOLOG Genomic Order:  3531
Name:  ? Sobic.001G335900 Secondary Identifier:  ? PAC:37941754
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G335900 0.5kb upstream 0.5kb upstream 10259 true Chr01: 62443239-62453497 Sorghum bicolor
Sobic.001G335900 0.5kb upstream 0.5kb upstream 500 false Chr01: 62443239-62443738 Sorghum bicolor
Sobic.001G335900 0.5kb downstream 0.5kb downstream 10259 true Chr01: 62443739-62453997 Sorghum bicolor
Sobic.001G335900 0.5kb downstream 0.5kb downstream 500 false Chr01: 62453498-62453997 Sorghum bicolor
Sobic.001G335900 1.0kb upstream 1.0kb upstream 10759 true Chr01: 62442739-62453497 Sorghum bicolor
Sobic.001G335900 1.0kb upstream 1.0kb upstream 1000 false Chr01: 62442739-62443738 Sorghum bicolor
Sobic.001G335900 1.0kb downstream 1.0kb downstream 10759 true Chr01: 62443739-62454497 Sorghum bicolor
Sobic.001G335900 1.0kb downstream 1.0kb downstream 1000 false Chr01: 62453498-62454497 Sorghum bicolor
Sobic.001G335900 2.0kb upstream 2.0kb upstream 11759 true Chr01: 62441739-62453497 Sorghum bicolor
Sobic.001G335900 2.0kb upstream 2.0kb upstream 2000 false Chr01: 62441739-62443738 Sorghum bicolor
Sobic.001G335900 2.0kb downstream 2.0kb downstream 11759 true Chr01: 62443739-62455497 Sorghum bicolor
Sobic.001G335900 2.0kb downstream 2.0kb downstream 2000 false Chr01: 62453498-62455497 Sorghum bicolor
Sobic.001G335900 5.0kb upstream 5.0kb upstream 14759 true Chr01: 62438739-62453497 Sorghum bicolor
Sobic.001G335900 5.0kb upstream 5.0kb upstream 5000 false Chr01: 62438739-62443738 Sorghum bicolor
Sobic.001G335900 5.0kb downstream 5.0kb downstream 14759 true Chr01: 62443739-62458497 Sorghum bicolor
Sobic.001G335900 5.0kb downstream 5.0kb downstream 5000 false Chr01: 62453498-62458497 Sorghum bicolor
Sobic.001G335900 10.0kb upstream 10.0kb upstream 19759 true Chr01: 62433739-62453497 Sorghum bicolor
Sobic.001G335900 10.0kb upstream 10.0kb upstream 10000 false Chr01: 62433739-62443738 Sorghum bicolor
Sobic.001G335900 10.0kb downstream 10.0kb downstream 19759 true Chr01: 62443739-62463497 Sorghum bicolor
Sobic.001G335900 10.0kb downstream 10.0kb downstream 10000 false Chr01: 62453498-62463497 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122188797 5267 Panicoideae View MSA
124575507 5269 Grass View MSA
122043794 5273 Angiosperm View MSA
121345189 5274 Embryophyte View MSA
123425999 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.044        
cufflinks 1.36       Low
cufflinks 4.024        
cufflinks 5.721        
cufflinks 11.723        
cufflinks 6.548        
cufflinks 7.46        
cufflinks 2.934       Low
cufflinks 11.536        
cufflinks 10.243        
cufflinks 9.686        
cufflinks 8.761        
cufflinks 9.766        
cufflinks 9.474        
cufflinks 8.899        
cufflinks 3.353       Low
cufflinks 7.549        
cufflinks 8.108        
cufflinks 3.652       Low
cufflinks 9.309        
cufflinks 11.069        
cufflinks 14.306     High High
cufflinks 10.534        
cufflinks 10.384        
cufflinks 3.032       Low
cufflinks 1.251       Low
cufflinks 8.199        
cufflinks 5.991        
cufflinks 7.416        
cufflinks 9.919        

0 Strain