Gene : Sobic.005G042000 S. bicolor v3.1.1
Defline:  (1 of 1) K01602 - ribulose-bisphosphate carboxylase small chain (rbcS) Genomic Order:  421
Name:  ? Sobic.005G042000 Secondary Identifier:  ? PAC:37924054
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor CALVIN-PWY Sorghum bicolor pathologic  
Sbicolor PHOTOALL-PWY Sorghum bicolor pathologic  
Sbicolor PWY-5723 Sorghum bicolor pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.005G042000 0.5kb upstream 0.5kb upstream 1822 true Chr05: 3876057-3877878 Sorghum bicolor
Sobic.005G042000 0.5kb upstream 0.5kb upstream 500 false Chr05: 3877379-3877878 Sorghum bicolor
Sobic.005G042000 0.5kb downstream 0.5kb downstream 1822 true Chr05: 3875557-3877378 Sorghum bicolor
Sobic.005G042000 0.5kb downstream 0.5kb downstream 500 false Chr05: 3875557-3876056 Sorghum bicolor
Sobic.005G042000 1.0kb upstream 1.0kb upstream 2322 true Chr05: 3876057-3878378 Sorghum bicolor
Sobic.005G042000 1.0kb upstream 1.0kb upstream 1000 false Chr05: 3877379-3878378 Sorghum bicolor
Sobic.005G042000 1.0kb downstream 1.0kb downstream 2322 true Chr05: 3875057-3877378 Sorghum bicolor
Sobic.005G042000 1.0kb downstream 1.0kb downstream 1000 false Chr05: 3875057-3876056 Sorghum bicolor
Sobic.005G042000 2.0kb upstream 2.0kb upstream 3322 true Chr05: 3876057-3879378 Sorghum bicolor
Sobic.005G042000 2.0kb upstream 2.0kb upstream 2000 false Chr05: 3877379-3879378 Sorghum bicolor
Sobic.005G042000 2.0kb downstream 2.0kb downstream 3322 true Chr05: 3874057-3877378 Sorghum bicolor
Sobic.005G042000 2.0kb downstream 2.0kb downstream 2000 false Chr05: 3874057-3876056 Sorghum bicolor
Sobic.005G042000 5.0kb upstream 5.0kb upstream 6322 true Chr05: 3876057-3882378 Sorghum bicolor
Sobic.005G042000 5.0kb upstream 5.0kb upstream 5000 false Chr05: 3877379-3882378 Sorghum bicolor
Sobic.005G042000 5.0kb downstream 5.0kb downstream 6322 true Chr05: 3871057-3877378 Sorghum bicolor
Sobic.005G042000 5.0kb downstream 5.0kb downstream 5000 false Chr05: 3871057-3876056 Sorghum bicolor
Sobic.005G042000 10.0kb upstream 10.0kb upstream 11322 true Chr05: 3876057-3887378 Sorghum bicolor
Sobic.005G042000 10.0kb upstream 10.0kb upstream 10000 false Chr05: 3877379-3887378 Sorghum bicolor
Sobic.005G042000 10.0kb downstream 10.0kb downstream 11322 true Chr05: 3866057-3877378 Sorghum bicolor
Sobic.005G042000 10.0kb downstream 10.0kb downstream 10000 false Chr05: 3866057-3876056 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122199516 5267 Panicoideae View MSA
124590513 5269 Grass View MSA
122046951 5273 Angiosperm View MSA
121348432 5274 Embryophyte View MSA
123426346 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.786       Low
cufflinks 4346.013     High High
cufflinks 698.56     High  
cufflinks 233.058     High  
cufflinks 30.431     High  
cufflinks 612.121     High  
cufflinks 2267.316     High High
cufflinks 6802.008     High High
cufflinks 48.84     High  
cufflinks 57.782     High  
cufflinks 2.565       Low
cufflinks 3.678       Low
cufflinks 109.73     High  
cufflinks 2.817       Low
cufflinks 531.779     High  
cufflinks 1401.302     High  
cufflinks 1872.791     High High
cufflinks 1920.89     High High
cufflinks 2261.497     High High
cufflinks 589.334     High  
cufflinks 8.952        
cufflinks 1.048       Low
cufflinks 2.189       Low
cufflinks 8.94        
cufflinks 837.662     High  
cufflinks 6886.891     High High
cufflinks 1.393       Low
cufflinks 2.134       Low
cufflinks 2982.44     High High
cufflinks 421.373     High  

0 Strain