Gene : Sobic.001G333500 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR11638//PTHR11638:SF121 - ATP-DEPENDENT CLP PROTEASE // CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC Genomic Order:  3506
Name:  ? Sobic.001G333500 Secondary Identifier:  ? PAC:37938666
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G333500 0.5kb upstream 0.5kb upstream 9157 true Chr01: 62224868-62234024 Sorghum bicolor
Sobic.001G333500 0.5kb upstream 0.5kb upstream 500 false Chr01: 62233525-62234024 Sorghum bicolor
Sobic.001G333500 0.5kb downstream 0.5kb downstream 9157 true Chr01: 62224368-62233524 Sorghum bicolor
Sobic.001G333500 0.5kb downstream 0.5kb downstream 500 false Chr01: 62224368-62224867 Sorghum bicolor
Sobic.001G333500 1.0kb upstream 1.0kb upstream 9657 true Chr01: 62224868-62234524 Sorghum bicolor
Sobic.001G333500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 62233525-62234524 Sorghum bicolor
Sobic.001G333500 1.0kb downstream 1.0kb downstream 9657 true Chr01: 62223868-62233524 Sorghum bicolor
Sobic.001G333500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 62223868-62224867 Sorghum bicolor
Sobic.001G333500 2.0kb upstream 2.0kb upstream 10657 true Chr01: 62224868-62235524 Sorghum bicolor
Sobic.001G333500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 62233525-62235524 Sorghum bicolor
Sobic.001G333500 2.0kb downstream 2.0kb downstream 10657 true Chr01: 62222868-62233524 Sorghum bicolor
Sobic.001G333500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 62222868-62224867 Sorghum bicolor
Sobic.001G333500 5.0kb upstream 5.0kb upstream 13657 true Chr01: 62224868-62238524 Sorghum bicolor
Sobic.001G333500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 62233525-62238524 Sorghum bicolor
Sobic.001G333500 5.0kb downstream 5.0kb downstream 13657 true Chr01: 62219868-62233524 Sorghum bicolor
Sobic.001G333500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 62219868-62224867 Sorghum bicolor
Sobic.001G333500 10.0kb upstream 10.0kb upstream 18657 true Chr01: 62224868-62243524 Sorghum bicolor
Sobic.001G333500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 62233525-62243524 Sorghum bicolor
Sobic.001G333500 10.0kb downstream 10.0kb downstream 18657 true Chr01: 62214868-62233524 Sorghum bicolor
Sobic.001G333500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 62214868-62224867 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196633 5267 Panicoideae View MSA
124588188 5269 Grass View MSA
122044164 5273 Angiosperm View MSA
121345857 5274 Embryophyte View MSA
123426722 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.151        
cufflinks 11.72     High  
cufflinks 16.653     High  
cufflinks 9.502        
cufflinks 10.493        
cufflinks 8.369        
cufflinks 17.658     High High
cufflinks 12.975     High  
cufflinks 17.308     High High
cufflinks 13.762     High  
cufflinks 4.407       Low
cufflinks 5.756        
cufflinks 6.876        
cufflinks 6.424        
cufflinks 10.196        
cufflinks 16.013     High  
cufflinks 17.81     High High
cufflinks 18.201     High High
cufflinks 12.852     High  
cufflinks 19.368     High High
cufflinks 15.37     High  
cufflinks 3.745       Low
cufflinks 5.77        
cufflinks 6.15        
cufflinks 25.063     High High
cufflinks 23.948     High High
cufflinks 6.645        
cufflinks 27.174     High High
cufflinks 13.896     High  
cufflinks 13.994     High  

0 Strain