Gene : Sobic.001G327300 S. bicolor v3.1.1
Defline:  (1 of 4) 2.1.1.79 - Cyclopropane-fatty-acyl-phospholipid synthase / Unsaturated-phospholipid methyltransferase Genomic Order:  3444
Name:  ? Sobic.001G327300 Secondary Identifier:  ? PAC:37943807
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-4942 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G327300 0.5kb upstream 0.5kb upstream 15197 true Chr01: 61394046-61409242 Sorghum bicolor
Sobic.001G327300 0.5kb upstream 0.5kb upstream 500 false Chr01: 61408743-61409242 Sorghum bicolor
Sobic.001G327300 0.5kb downstream 0.5kb downstream 15197 true Chr01: 61393546-61408742 Sorghum bicolor
Sobic.001G327300 0.5kb downstream 0.5kb downstream 500 false Chr01: 61393546-61394045 Sorghum bicolor
Sobic.001G327300 1.0kb upstream 1.0kb upstream 15697 true Chr01: 61394046-61409742 Sorghum bicolor
Sobic.001G327300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 61408743-61409742 Sorghum bicolor
Sobic.001G327300 1.0kb downstream 1.0kb downstream 15697 true Chr01: 61393046-61408742 Sorghum bicolor
Sobic.001G327300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 61393046-61394045 Sorghum bicolor
Sobic.001G327300 2.0kb upstream 2.0kb upstream 16697 true Chr01: 61394046-61410742 Sorghum bicolor
Sobic.001G327300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 61408743-61410742 Sorghum bicolor
Sobic.001G327300 2.0kb downstream 2.0kb downstream 16697 true Chr01: 61392046-61408742 Sorghum bicolor
Sobic.001G327300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 61392046-61394045 Sorghum bicolor
Sobic.001G327300 5.0kb upstream 5.0kb upstream 19697 true Chr01: 61394046-61413742 Sorghum bicolor
Sobic.001G327300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 61408743-61413742 Sorghum bicolor
Sobic.001G327300 5.0kb downstream 5.0kb downstream 19697 true Chr01: 61389046-61408742 Sorghum bicolor
Sobic.001G327300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 61389046-61394045 Sorghum bicolor
Sobic.001G327300 10.0kb upstream 10.0kb upstream 24697 true Chr01: 61394046-61418742 Sorghum bicolor
Sobic.001G327300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 61408743-61418742 Sorghum bicolor
Sobic.001G327300 10.0kb downstream 10.0kb downstream 24697 true Chr01: 61384046-61408742 Sorghum bicolor
Sobic.001G327300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 61384046-61394045 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122030660 5273 Angiosperm View MSA
122200875 5267 Panicoideae View MSA
124468606 5269 Grass View MSA
121299805 5274 Embryophyte View MSA
123337640 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.16       Low
cufflinks 0.057       Low
cufflinks 0.207        
cufflinks 0.205        
cufflinks 2.089       High
cufflinks 0.504        
cufflinks 0.339        
cufflinks 0.069       Low
cufflinks 0.619        
cufflinks 0.64        
cufflinks 1.146       High
cufflinks 1.186       High
cufflinks 0.698        
cufflinks 0.831        
cufflinks 0.48        
cufflinks 0.11       Low
cufflinks 0.263        
cufflinks 0.276        
cufflinks 0.154       Low
cufflinks 0.304        
cufflinks 1.542       High
cufflinks 1.234       High
cufflinks 0.807        
cufflinks 0.851        
cufflinks 0.108       Low
cufflinks 0.056       Low
cufflinks 0.952        
cufflinks 0.156       Low
cufflinks 0.195        
cufflinks 0.4        

0 Strain