Gene : Sobic.001G329800 S. bicolor v3.1.1
Defline:  (1 of 1) 5.3.99.6 - Allene-oxide cyclase Genomic Order:  3466
Name:  ? Sobic.001G329800 Secondary Identifier:  ? PAC:37939373
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-735 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G329800 0.5kb upstream 0.5kb upstream 6683 true Chr01: 61735895-61742577 Sorghum bicolor
Sobic.001G329800 0.5kb upstream 0.5kb upstream 500 false Chr01: 61735895-61736394 Sorghum bicolor
Sobic.001G329800 0.5kb downstream 0.5kb downstream 6683 true Chr01: 61736395-61743077 Sorghum bicolor
Sobic.001G329800 0.5kb downstream 0.5kb downstream 500 false Chr01: 61742578-61743077 Sorghum bicolor
Sobic.001G329800 1.0kb upstream 1.0kb upstream 7183 true Chr01: 61735395-61742577 Sorghum bicolor
Sobic.001G329800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 61735395-61736394 Sorghum bicolor
Sobic.001G329800 1.0kb downstream 1.0kb downstream 7183 true Chr01: 61736395-61743577 Sorghum bicolor
Sobic.001G329800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 61742578-61743577 Sorghum bicolor
Sobic.001G329800 2.0kb upstream 2.0kb upstream 8183 true Chr01: 61734395-61742577 Sorghum bicolor
Sobic.001G329800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 61734395-61736394 Sorghum bicolor
Sobic.001G329800 2.0kb downstream 2.0kb downstream 8183 true Chr01: 61736395-61744577 Sorghum bicolor
Sobic.001G329800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 61742578-61744577 Sorghum bicolor
Sobic.001G329800 5.0kb upstream 5.0kb upstream 11183 true Chr01: 61731395-61742577 Sorghum bicolor
Sobic.001G329800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 61731395-61736394 Sorghum bicolor
Sobic.001G329800 5.0kb downstream 5.0kb downstream 11183 true Chr01: 61736395-61747577 Sorghum bicolor
Sobic.001G329800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 61742578-61747577 Sorghum bicolor
Sobic.001G329800 10.0kb upstream 10.0kb upstream 16183 true Chr01: 61726395-61742577 Sorghum bicolor
Sobic.001G329800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 61726395-61736394 Sorghum bicolor
Sobic.001G329800 10.0kb downstream 10.0kb downstream 16183 true Chr01: 61736395-61752577 Sorghum bicolor
Sobic.001G329800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 61742578-61752577 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122185163 5267 Panicoideae View MSA
124573645 5269 Grass View MSA
122045897 5273 Angiosperm View MSA
121350459 5274 Embryophyte View MSA
123426138 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.635        
cufflinks 1.579       Low
cufflinks 7.761        
cufflinks 7.446        
cufflinks 12.215        
cufflinks 15.581     High High
cufflinks 2.654        
cufflinks 1.862       Low
cufflinks 5.44        
cufflinks 7.238        
cufflinks 10.877        
cufflinks 4.468        
cufflinks 7.775        
cufflinks 5.058        
cufflinks 7.032        
cufflinks 2.747        
cufflinks 2.236       Low
cufflinks 2.116       Low
cufflinks 10.925     High  
cufflinks 2.335        
cufflinks 2.693        
cufflinks 8.884        
cufflinks 4.371        
cufflinks 4.047        
cufflinks 1.121       Low
cufflinks 0.694       Low
cufflinks 12.971     High  
cufflinks 0.528       Low
cufflinks 7.535        
cufflinks 8.007        

0 Strain