Gene : Sobic.001G316700 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR10742:SF284 - LYSINE-SPECIFIC HISTONE DEMETHYLASE 1A Genomic Order:  3336
Name:  ? Sobic.001G316700 Secondary Identifier:  ? PAC:37940067
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-6441 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G316700 0.5kb upstream 0.5kb upstream 12779 true Chr01: 60487674-60500452 Sorghum bicolor
Sobic.001G316700 0.5kb upstream 0.5kb upstream 500 false Chr01: 60499953-60500452 Sorghum bicolor
Sobic.001G316700 0.5kb downstream 0.5kb downstream 12779 true Chr01: 60487174-60499952 Sorghum bicolor
Sobic.001G316700 0.5kb downstream 0.5kb downstream 500 false Chr01: 60487174-60487673 Sorghum bicolor
Sobic.001G316700 1.0kb upstream 1.0kb upstream 13279 true Chr01: 60487674-60500952 Sorghum bicolor
Sobic.001G316700 1.0kb upstream 1.0kb upstream 1000 false Chr01: 60499953-60500952 Sorghum bicolor
Sobic.001G316700 1.0kb downstream 1.0kb downstream 13279 true Chr01: 60486674-60499952 Sorghum bicolor
Sobic.001G316700 1.0kb downstream 1.0kb downstream 1000 false Chr01: 60486674-60487673 Sorghum bicolor
Sobic.001G316700 2.0kb upstream 2.0kb upstream 14279 true Chr01: 60487674-60501952 Sorghum bicolor
Sobic.001G316700 2.0kb upstream 2.0kb upstream 2000 false Chr01: 60499953-60501952 Sorghum bicolor
Sobic.001G316700 2.0kb downstream 2.0kb downstream 14279 true Chr01: 60485674-60499952 Sorghum bicolor
Sobic.001G316700 2.0kb downstream 2.0kb downstream 2000 false Chr01: 60485674-60487673 Sorghum bicolor
Sobic.001G316700 5.0kb upstream 5.0kb upstream 17279 true Chr01: 60487674-60504952 Sorghum bicolor
Sobic.001G316700 5.0kb upstream 5.0kb upstream 5000 false Chr01: 60499953-60504952 Sorghum bicolor
Sobic.001G316700 5.0kb downstream 5.0kb downstream 17279 true Chr01: 60482674-60499952 Sorghum bicolor
Sobic.001G316700 5.0kb downstream 5.0kb downstream 5000 false Chr01: 60482674-60487673 Sorghum bicolor
Sobic.001G316700 10.0kb upstream 10.0kb upstream 22279 true Chr01: 60487674-60509952 Sorghum bicolor
Sobic.001G316700 10.0kb upstream 10.0kb upstream 10000 false Chr01: 60499953-60509952 Sorghum bicolor
Sobic.001G316700 10.0kb downstream 10.0kb downstream 22279 true Chr01: 60477674-60499952 Sorghum bicolor
Sobic.001G316700 10.0kb downstream 10.0kb downstream 10000 false Chr01: 60477674-60487673 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186700 5267 Panicoideae View MSA
124576158 5269 Grass View MSA
122046463 5273 Angiosperm View MSA
121349079 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.139        
cufflinks 3.147        
cufflinks 2.572       Low
cufflinks 2.473       Low
cufflinks 4.794        
cufflinks 3.79        
cufflinks 4.546        
cufflinks 3.354        
cufflinks 4.993        
cufflinks 4.523        
cufflinks 3.908        
cufflinks 5.796       High
cufflinks 3.778        
cufflinks 3.836        
cufflinks 4.369        
cufflinks 3.009        
cufflinks 4.017        
cufflinks 4.09        
cufflinks 3.0        
cufflinks 4.263        
cufflinks 11.028       High
cufflinks 3.337        
cufflinks 4.337        
cufflinks 4.216        
cufflinks 3.706        
cufflinks 3.34        
cufflinks 3.919        
cufflinks 2.708       Low
cufflinks 3.272        
cufflinks 5.351       High

0 Strain