Gene : Sobic.005G056500 S. bicolor v3.1.1
Defline:  (1 of 1) K13140 - integrator complex subunit 3 (INTS3) Genomic Order:  559
Name:  ? Sobic.005G056500 Secondary Identifier:  ? PAC:37923687
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.005G056500 0.5kb upstream 0.5kb upstream 2777 true Chr05: 5713725-5716501 Sorghum bicolor
Sobic.005G056500 0.5kb upstream 0.5kb upstream 500 false Chr05: 5716002-5716501 Sorghum bicolor
Sobic.005G056500 0.5kb downstream 0.5kb downstream 2777 true Chr05: 5713225-5716001 Sorghum bicolor
Sobic.005G056500 0.5kb downstream 0.5kb downstream 500 false Chr05: 5713225-5713724 Sorghum bicolor
Sobic.005G056500 1.0kb upstream 1.0kb upstream 3277 true Chr05: 5713725-5717001 Sorghum bicolor
Sobic.005G056500 1.0kb upstream 1.0kb upstream 1000 false Chr05: 5716002-5717001 Sorghum bicolor
Sobic.005G056500 1.0kb downstream 1.0kb downstream 3277 true Chr05: 5712725-5716001 Sorghum bicolor
Sobic.005G056500 1.0kb downstream 1.0kb downstream 1000 false Chr05: 5712725-5713724 Sorghum bicolor
Sobic.005G056500 2.0kb upstream 2.0kb upstream 4277 true Chr05: 5713725-5718001 Sorghum bicolor
Sobic.005G056500 2.0kb upstream 2.0kb upstream 2000 false Chr05: 5716002-5718001 Sorghum bicolor
Sobic.005G056500 2.0kb downstream 2.0kb downstream 4277 true Chr05: 5711725-5716001 Sorghum bicolor
Sobic.005G056500 2.0kb downstream 2.0kb downstream 2000 false Chr05: 5711725-5713724 Sorghum bicolor
Sobic.005G056500 5.0kb upstream 5.0kb upstream 7277 true Chr05: 5713725-5721001 Sorghum bicolor
Sobic.005G056500 5.0kb upstream 5.0kb upstream 5000 false Chr05: 5716002-5721001 Sorghum bicolor
Sobic.005G056500 5.0kb downstream 5.0kb downstream 7277 true Chr05: 5708725-5716001 Sorghum bicolor
Sobic.005G056500 5.0kb downstream 5.0kb downstream 5000 false Chr05: 5708725-5713724 Sorghum bicolor
Sobic.005G056500 10.0kb upstream 10.0kb upstream 12277 true Chr05: 5713725-5726001 Sorghum bicolor
Sobic.005G056500 10.0kb upstream 10.0kb upstream 10000 false Chr05: 5716002-5726001 Sorghum bicolor
Sobic.005G056500 10.0kb downstream 10.0kb downstream 12277 true Chr05: 5703725-5716001 Sorghum bicolor
Sobic.005G056500 10.0kb downstream 10.0kb downstream 10000 false Chr05: 5703725-5713724 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026317 5273 Angiosperm View MSA
122189342 5267 Panicoideae View MSA
124581942 5269 Grass View MSA
121296275 5274 Embryophyte View MSA
123334469 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.157        
cufflinks 2.689        
cufflinks 1.295       Low
cufflinks 1.505       Low
cufflinks 3.741        
cufflinks 3.936        
cufflinks 3.181        
cufflinks 1.908        
cufflinks 3.579        
cufflinks 4.492       High
cufflinks 2.201        
cufflinks 3.866        
cufflinks 3.134        
cufflinks 3.572        
cufflinks 3.152        
cufflinks 1.749       Low
cufflinks 3.657        
cufflinks 3.374        
cufflinks 1.341       Low
cufflinks 4.533       High
cufflinks 5.167       High
cufflinks 3.004        
cufflinks 3.269        
cufflinks 3.576        
cufflinks 1.474       Low
cufflinks 2.009        
cufflinks 1.535       Low
cufflinks 1.312       Low
cufflinks 6.625       High
cufflinks 4.003        

0 Strain