Gene : Sobic.005G059800 S. bicolor v3.1.1
Defline:  (1 of 1) KOG0108 - mRNA cleavage and polyadenylation factor I complex, subunit RNA15 Genomic Order:  592
Name:  ? Sobic.005G059800 Secondary Identifier:  ? PAC:37923189
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.005G059800 0.5kb upstream 0.5kb upstream 6109 true Chr05: 6165526-6171634 Sorghum bicolor
Sobic.005G059800 0.5kb upstream 0.5kb upstream 500 false Chr05: 6165526-6166025 Sorghum bicolor
Sobic.005G059800 0.5kb downstream 0.5kb downstream 6109 true Chr05: 6166026-6172134 Sorghum bicolor
Sobic.005G059800 0.5kb downstream 0.5kb downstream 500 false Chr05: 6171635-6172134 Sorghum bicolor
Sobic.005G059800 1.0kb upstream 1.0kb upstream 6609 true Chr05: 6165026-6171634 Sorghum bicolor
Sobic.005G059800 1.0kb upstream 1.0kb upstream 1000 false Chr05: 6165026-6166025 Sorghum bicolor
Sobic.005G059800 1.0kb downstream 1.0kb downstream 6609 true Chr05: 6166026-6172634 Sorghum bicolor
Sobic.005G059800 1.0kb downstream 1.0kb downstream 1000 false Chr05: 6171635-6172634 Sorghum bicolor
Sobic.005G059800 2.0kb upstream 2.0kb upstream 7609 true Chr05: 6164026-6171634 Sorghum bicolor
Sobic.005G059800 2.0kb upstream 2.0kb upstream 2000 false Chr05: 6164026-6166025 Sorghum bicolor
Sobic.005G059800 2.0kb downstream 2.0kb downstream 7609 true Chr05: 6166026-6173634 Sorghum bicolor
Sobic.005G059800 2.0kb downstream 2.0kb downstream 2000 false Chr05: 6171635-6173634 Sorghum bicolor
Sobic.005G059800 5.0kb upstream 5.0kb upstream 10609 true Chr05: 6161026-6171634 Sorghum bicolor
Sobic.005G059800 5.0kb upstream 5.0kb upstream 5000 false Chr05: 6161026-6166025 Sorghum bicolor
Sobic.005G059800 5.0kb downstream 5.0kb downstream 10609 true Chr05: 6166026-6176634 Sorghum bicolor
Sobic.005G059800 5.0kb downstream 5.0kb downstream 5000 false Chr05: 6171635-6176634 Sorghum bicolor
Sobic.005G059800 10.0kb upstream 10.0kb upstream 15609 true Chr05: 6156026-6171634 Sorghum bicolor
Sobic.005G059800 10.0kb upstream 10.0kb upstream 10000 false Chr05: 6156026-6166025 Sorghum bicolor
Sobic.005G059800 10.0kb downstream 10.0kb downstream 15609 true Chr05: 6166026-6181634 Sorghum bicolor
Sobic.005G059800 10.0kb downstream 10.0kb downstream 10000 false Chr05: 6171635-6181634 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041194 5273 Angiosperm View MSA
122194002 5267 Panicoideae View MSA
124577581 5269 Grass View MSA
123429142 5275 Viridiplantae View MSA
121344917 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.401       High
cufflinks 2.981        
cufflinks 2.857        
cufflinks 3.104        
cufflinks 4.403       High
cufflinks 5.246       High
cufflinks 2.227       Low
cufflinks 2.112       Low
cufflinks 5.233       High
cufflinks 4.52       High
cufflinks 2.967        
cufflinks 3.085        
cufflinks 4.214       High
cufflinks 2.655        
cufflinks 3.045        
cufflinks 2.502        
cufflinks 1.975       Low
cufflinks 2.192       Low
cufflinks 3.347        
cufflinks 2.209       Low
cufflinks 4.984       High
cufflinks 2.591        
cufflinks 2.677        
cufflinks 2.944        
cufflinks 3.393        
cufflinks 2.841        
cufflinks 3.75        
cufflinks 5.105       High
cufflinks 2.424        
cufflinks 2.662        

0 Strain