Gene : Sobic.001G410700 S. bicolor v3.1.1
Defline:  (1 of 6) PF12854//PF13041//PF13812 - PPR repeat (PPR_1) // PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  4302
Name:  ? Sobic.001G410700 Secondary Identifier:  ? PAC:37941831
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G410700 0.5kb upstream 0.5kb upstream 7021 true Chr01: 69399318-69406338 Sorghum bicolor
Sobic.001G410700 0.5kb upstream 0.5kb upstream 500 false Chr01: 69399318-69399817 Sorghum bicolor
Sobic.001G410700 0.5kb downstream 0.5kb downstream 7021 true Chr01: 69399818-69406838 Sorghum bicolor
Sobic.001G410700 0.5kb downstream 0.5kb downstream 500 false Chr01: 69406339-69406838 Sorghum bicolor
Sobic.001G410700 1.0kb upstream 1.0kb upstream 7521 true Chr01: 69398818-69406338 Sorghum bicolor
Sobic.001G410700 1.0kb upstream 1.0kb upstream 1000 false Chr01: 69398818-69399817 Sorghum bicolor
Sobic.001G410700 1.0kb downstream 1.0kb downstream 7521 true Chr01: 69399818-69407338 Sorghum bicolor
Sobic.001G410700 1.0kb downstream 1.0kb downstream 1000 false Chr01: 69406339-69407338 Sorghum bicolor
Sobic.001G410700 2.0kb upstream 2.0kb upstream 8521 true Chr01: 69397818-69406338 Sorghum bicolor
Sobic.001G410700 2.0kb upstream 2.0kb upstream 2000 false Chr01: 69397818-69399817 Sorghum bicolor
Sobic.001G410700 2.0kb downstream 2.0kb downstream 8521 true Chr01: 69399818-69408338 Sorghum bicolor
Sobic.001G410700 2.0kb downstream 2.0kb downstream 2000 false Chr01: 69406339-69408338 Sorghum bicolor
Sobic.001G410700 5.0kb upstream 5.0kb upstream 11521 true Chr01: 69394818-69406338 Sorghum bicolor
Sobic.001G410700 5.0kb upstream 5.0kb upstream 5000 false Chr01: 69394818-69399817 Sorghum bicolor
Sobic.001G410700 5.0kb downstream 5.0kb downstream 11521 true Chr01: 69399818-69411338 Sorghum bicolor
Sobic.001G410700 5.0kb downstream 5.0kb downstream 5000 false Chr01: 69406339-69411338 Sorghum bicolor
Sobic.001G410700 10.0kb upstream 10.0kb upstream 16521 true Chr01: 69389818-69406338 Sorghum bicolor
Sobic.001G410700 10.0kb upstream 10.0kb upstream 10000 false Chr01: 69389818-69399817 Sorghum bicolor
Sobic.001G410700 10.0kb downstream 10.0kb downstream 16521 true Chr01: 69399818-69416338 Sorghum bicolor
Sobic.001G410700 10.0kb downstream 10.0kb downstream 10000 false Chr01: 69406339-69416338 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180236 5267 Panicoideae View MSA
124571137 5269 Grass View MSA
122044126 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121347187 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.285       Low
cufflinks 2.979        
cufflinks 6.49        
cufflinks 2.897        
cufflinks 3.786        
cufflinks 8.693       High
cufflinks 4.842        
cufflinks 5.775        
cufflinks 2.538        
cufflinks 2.327        
cufflinks 1.465        
cufflinks 1.302        
cufflinks 2.121        
cufflinks 0.877       Low
cufflinks 2.898        
cufflinks 5.216        
cufflinks 4.276        
cufflinks 6.71       High
cufflinks 3.992        
cufflinks 2.719        
cufflinks 5.594        
cufflinks 1.212        
cufflinks 1.044        
cufflinks 1.134        
cufflinks 5.093        
cufflinks 4.663        
cufflinks 0.945        
cufflinks 0.038     Low Low
cufflinks 10.063       High
cufflinks 3.375        

0 Strain