Gene : Sobic.005G149650 S. bicolor v3.1.1
Defline:  (1 of 16) PF04195 - Putative gypsy type transposon (Transposase_28) Genomic Order:  1591
Name:  ? Sobic.005G149650 Secondary Identifier:  ? PAC:37923210
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.005G149650 0.5kb upstream 0.5kb upstream 3625 true Chr05: 61848843-61852467 Sorghum bicolor
Sobic.005G149650 0.5kb upstream 0.5kb upstream 500 false Chr05: 61848843-61849342 Sorghum bicolor
Sobic.005G149650 0.5kb downstream 0.5kb downstream 3625 true Chr05: 61849343-61852967 Sorghum bicolor
Sobic.005G149650 0.5kb downstream 0.5kb downstream 500 false Chr05: 61852468-61852967 Sorghum bicolor
Sobic.005G149650 1.0kb upstream 1.0kb upstream 4125 true Chr05: 61848343-61852467 Sorghum bicolor
Sobic.005G149650 1.0kb upstream 1.0kb upstream 1000 false Chr05: 61848343-61849342 Sorghum bicolor
Sobic.005G149650 1.0kb downstream 1.0kb downstream 4125 true Chr05: 61849343-61853467 Sorghum bicolor
Sobic.005G149650 1.0kb downstream 1.0kb downstream 1000 false Chr05: 61852468-61853467 Sorghum bicolor
Sobic.005G149650 2.0kb upstream 2.0kb upstream 5125 true Chr05: 61847343-61852467 Sorghum bicolor
Sobic.005G149650 2.0kb upstream 2.0kb upstream 2000 false Chr05: 61847343-61849342 Sorghum bicolor
Sobic.005G149650 2.0kb downstream 2.0kb downstream 5125 true Chr05: 61849343-61854467 Sorghum bicolor
Sobic.005G149650 2.0kb downstream 2.0kb downstream 2000 false Chr05: 61852468-61854467 Sorghum bicolor
Sobic.005G149650 5.0kb upstream 5.0kb upstream 8125 true Chr05: 61844343-61852467 Sorghum bicolor
Sobic.005G149650 5.0kb upstream 5.0kb upstream 5000 false Chr05: 61844343-61849342 Sorghum bicolor
Sobic.005G149650 5.0kb downstream 5.0kb downstream 8125 true Chr05: 61849343-61857467 Sorghum bicolor
Sobic.005G149650 5.0kb downstream 5.0kb downstream 5000 false Chr05: 61852468-61857467 Sorghum bicolor
Sobic.005G149650 10.0kb upstream 10.0kb upstream 13125 true Chr05: 61839343-61852467 Sorghum bicolor
Sobic.005G149650 10.0kb upstream 10.0kb upstream 10000 false Chr05: 61839343-61849342 Sorghum bicolor
Sobic.005G149650 10.0kb downstream 10.0kb downstream 13125 true Chr05: 61849343-61862467 Sorghum bicolor
Sobic.005G149650 10.0kb downstream 10.0kb downstream 10000 false Chr05: 61852468-61862467 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121995681 5273 Angiosperm View MSA
122197520 5267 Panicoideae View MSA
124589230 5269 Grass View MSA
121265867 5274 Embryophyte View MSA
123304229 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.123       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.007     Low  
cufflinks 0.018     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.065     Low High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain