Gene : Sobic.001G407700 S. bicolor v3.1.1
Defline:  (1 of 4) 6.1.1.4 - Leucine--tRNA ligase / Leucyl-tRNA synthetase Genomic Order:  4270
Name:  ? Sobic.001G407700 Secondary Identifier:  ? PAC:37941988
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor TRNA-CHARGING-PWY Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G407700 0.5kb upstream 0.5kb upstream 6057 true Chr01: 69183041-69189097 Sorghum bicolor
Sobic.001G407700 0.5kb upstream 0.5kb upstream 500 false Chr01: 69183041-69183540 Sorghum bicolor
Sobic.001G407700 0.5kb downstream 0.5kb downstream 6057 true Chr01: 69183541-69189597 Sorghum bicolor
Sobic.001G407700 0.5kb downstream 0.5kb downstream 500 false Chr01: 69189098-69189597 Sorghum bicolor
Sobic.001G407700 1.0kb upstream 1.0kb upstream 6557 true Chr01: 69182541-69189097 Sorghum bicolor
Sobic.001G407700 1.0kb upstream 1.0kb upstream 1000 false Chr01: 69182541-69183540 Sorghum bicolor
Sobic.001G407700 1.0kb downstream 1.0kb downstream 6557 true Chr01: 69183541-69190097 Sorghum bicolor
Sobic.001G407700 1.0kb downstream 1.0kb downstream 1000 false Chr01: 69189098-69190097 Sorghum bicolor
Sobic.001G407700 2.0kb upstream 2.0kb upstream 7557 true Chr01: 69181541-69189097 Sorghum bicolor
Sobic.001G407700 2.0kb upstream 2.0kb upstream 2000 false Chr01: 69181541-69183540 Sorghum bicolor
Sobic.001G407700 2.0kb downstream 2.0kb downstream 7557 true Chr01: 69183541-69191097 Sorghum bicolor
Sobic.001G407700 2.0kb downstream 2.0kb downstream 2000 false Chr01: 69189098-69191097 Sorghum bicolor
Sobic.001G407700 5.0kb upstream 5.0kb upstream 10557 true Chr01: 69178541-69189097 Sorghum bicolor
Sobic.001G407700 5.0kb upstream 5.0kb upstream 5000 false Chr01: 69178541-69183540 Sorghum bicolor
Sobic.001G407700 5.0kb downstream 5.0kb downstream 10557 true Chr01: 69183541-69194097 Sorghum bicolor
Sobic.001G407700 5.0kb downstream 5.0kb downstream 5000 false Chr01: 69189098-69194097 Sorghum bicolor
Sobic.001G407700 10.0kb upstream 10.0kb upstream 15557 true Chr01: 69173541-69189097 Sorghum bicolor
Sobic.001G407700 10.0kb upstream 10.0kb upstream 10000 false Chr01: 69173541-69183540 Sorghum bicolor
Sobic.001G407700 10.0kb downstream 10.0kb downstream 15557 true Chr01: 69183541-69199097 Sorghum bicolor
Sobic.001G407700 10.0kb downstream 10.0kb downstream 10000 false Chr01: 69189098-69199097 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122195247 5267 Panicoideae View MSA
124584532 5269 Grass View MSA
122047618 5273 Angiosperm View MSA
121344832 5274 Embryophyte View MSA
123424388 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.584     High High
cufflinks 3.129       Low
cufflinks 6.041       Low
cufflinks 6.567        
cufflinks 14.259     High  
cufflinks 7.201        
cufflinks 11.179        
cufflinks 4.121       Low
cufflinks 12.425     High  
cufflinks 11.171        
cufflinks 14.136     High  
cufflinks 14.469     High  
cufflinks 9.738        
cufflinks 14.903     High  
cufflinks 9.976        
cufflinks 5.704       Low
cufflinks 11.051        
cufflinks 12.15     High  
cufflinks 7.094        
cufflinks 10.528        
cufflinks 18.467     High High
cufflinks 18.155     High High
cufflinks 17.838     High High
cufflinks 19.763     High High
cufflinks 4.959       Low
cufflinks 2.809       Low
cufflinks 11.533     High  
cufflinks 8.57        
cufflinks 11.59     High  
cufflinks 14.179     High  

0 Strain