Gene : Sobic.001G400500 S. bicolor v3.1.1
Defline:  (1 of 1) 3.4.22.54 - Calpain-3 / Muscle-specific calcium-activated neutral protease 3 Genomic Order:  4194
Name:  ? Sobic.001G400500 Secondary Identifier:  ? PAC:37941119
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0 Pathways

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G400500 0.5kb upstream 0.5kb upstream 20889 true Chr01: 68579201-68600089 Sorghum bicolor
Sobic.001G400500 0.5kb upstream 0.5kb upstream 500 false Chr01: 68599590-68600089 Sorghum bicolor
Sobic.001G400500 0.5kb downstream 0.5kb downstream 20889 true Chr01: 68578701-68599589 Sorghum bicolor
Sobic.001G400500 0.5kb downstream 0.5kb downstream 500 false Chr01: 68578701-68579200 Sorghum bicolor
Sobic.001G400500 1.0kb upstream 1.0kb upstream 21389 true Chr01: 68579201-68600589 Sorghum bicolor
Sobic.001G400500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 68599590-68600589 Sorghum bicolor
Sobic.001G400500 1.0kb downstream 1.0kb downstream 21389 true Chr01: 68578201-68599589 Sorghum bicolor
Sobic.001G400500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 68578201-68579200 Sorghum bicolor
Sobic.001G400500 2.0kb upstream 2.0kb upstream 22389 true Chr01: 68579201-68601589 Sorghum bicolor
Sobic.001G400500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 68599590-68601589 Sorghum bicolor
Sobic.001G400500 2.0kb downstream 2.0kb downstream 22389 true Chr01: 68577201-68599589 Sorghum bicolor
Sobic.001G400500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 68577201-68579200 Sorghum bicolor
Sobic.001G400500 5.0kb upstream 5.0kb upstream 25389 true Chr01: 68579201-68604589 Sorghum bicolor
Sobic.001G400500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 68599590-68604589 Sorghum bicolor
Sobic.001G400500 5.0kb downstream 5.0kb downstream 25389 true Chr01: 68574201-68599589 Sorghum bicolor
Sobic.001G400500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 68574201-68579200 Sorghum bicolor
Sobic.001G400500 10.0kb upstream 10.0kb upstream 30389 true Chr01: 68579201-68609589 Sorghum bicolor
Sobic.001G400500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 68599590-68609589 Sorghum bicolor
Sobic.001G400500 10.0kb downstream 10.0kb downstream 30389 true Chr01: 68569201-68599589 Sorghum bicolor
Sobic.001G400500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 68569201-68579200 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177844 5267 Panicoideae View MSA
124570683 5269 Grass View MSA
122043542 5273 Angiosperm View MSA
121345747 5274 Embryophyte View MSA
123380263 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.327       Low
cufflinks 1.916       Low
cufflinks 3.021        
cufflinks 2.917        
cufflinks 7.022       High
cufflinks 2.617       Low
cufflinks 4.781        
cufflinks 3.405        
cufflinks 4.737        
cufflinks 4.534        
cufflinks 5.253        
cufflinks 6.598       High
cufflinks 4.624        
cufflinks 4.539        
cufflinks 4.948        
cufflinks 2.23       Low
cufflinks 4.067        
cufflinks 4.236        
cufflinks 2.78        
cufflinks 4.605        
cufflinks 9.765       High
cufflinks 4.561        
cufflinks 4.986        
cufflinks 5.164        
cufflinks 3.977        
cufflinks 2.509       Low
cufflinks 5.265        
cufflinks 1.256       Low
cufflinks 4.973        
cufflinks 6.482       High

0 Strain