Gene : Sobic.001G401700 S. bicolor v3.1.1
Defline:  (1 of 2) 2.6.1.83 - LL-diaminopimelate aminotransferase / LL-diaminopimelate transaminase Genomic Order:  4206
Name:  ? Sobic.001G401700 Secondary Identifier:  ? PAC:37940523
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-5097 Sorghum bicolor pathologic  
Sbicolor PWY-724 Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G401700 0.5kb upstream 0.5kb upstream 6680 true Chr01: 68712092-68718771 Sorghum bicolor
Sobic.001G401700 0.5kb upstream 0.5kb upstream 500 false Chr01: 68718272-68718771 Sorghum bicolor
Sobic.001G401700 0.5kb downstream 0.5kb downstream 6680 true Chr01: 68711592-68718271 Sorghum bicolor
Sobic.001G401700 0.5kb downstream 0.5kb downstream 500 false Chr01: 68711592-68712091 Sorghum bicolor
Sobic.001G401700 1.0kb upstream 1.0kb upstream 7180 true Chr01: 68712092-68719271 Sorghum bicolor
Sobic.001G401700 1.0kb upstream 1.0kb upstream 1000 false Chr01: 68718272-68719271 Sorghum bicolor
Sobic.001G401700 1.0kb downstream 1.0kb downstream 7180 true Chr01: 68711092-68718271 Sorghum bicolor
Sobic.001G401700 1.0kb downstream 1.0kb downstream 1000 false Chr01: 68711092-68712091 Sorghum bicolor
Sobic.001G401700 2.0kb upstream 2.0kb upstream 8180 true Chr01: 68712092-68720271 Sorghum bicolor
Sobic.001G401700 2.0kb upstream 2.0kb upstream 2000 false Chr01: 68718272-68720271 Sorghum bicolor
Sobic.001G401700 2.0kb downstream 2.0kb downstream 8180 true Chr01: 68710092-68718271 Sorghum bicolor
Sobic.001G401700 2.0kb downstream 2.0kb downstream 2000 false Chr01: 68710092-68712091 Sorghum bicolor
Sobic.001G401700 5.0kb upstream 5.0kb upstream 11180 true Chr01: 68712092-68723271 Sorghum bicolor
Sobic.001G401700 5.0kb upstream 5.0kb upstream 5000 false Chr01: 68718272-68723271 Sorghum bicolor
Sobic.001G401700 5.0kb downstream 5.0kb downstream 11180 true Chr01: 68707092-68718271 Sorghum bicolor
Sobic.001G401700 5.0kb downstream 5.0kb downstream 5000 false Chr01: 68707092-68712091 Sorghum bicolor
Sobic.001G401700 10.0kb upstream 10.0kb upstream 16180 true Chr01: 68712092-68728271 Sorghum bicolor
Sobic.001G401700 10.0kb upstream 10.0kb upstream 10000 false Chr01: 68718272-68728271 Sorghum bicolor
Sobic.001G401700 10.0kb downstream 10.0kb downstream 16180 true Chr01: 68702092-68718271 Sorghum bicolor
Sobic.001G401700 10.0kb downstream 10.0kb downstream 10000 false Chr01: 68702092-68712091 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122194644 5267 Panicoideae View MSA
124590449 5269 Grass View MSA
122045161 5273 Angiosperm View MSA
121344343 5274 Embryophyte View MSA
123424947 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.653     High High
cufflinks 4.708       Low
cufflinks 10.355     High  
cufflinks 16.51     High  
cufflinks 9.094        
cufflinks 9.195        
cufflinks 15.655     High  
cufflinks 15.753     High  
cufflinks 10.814        
cufflinks 12.613     High  
cufflinks 12.763     High  
cufflinks 11.97     High  
cufflinks 7.306       Low
cufflinks 12.926     High  
cufflinks 8.56        
cufflinks 7.327       Low
cufflinks 16.471     High  
cufflinks 18.995     High High
cufflinks 9.916        
cufflinks 12.292     High  
cufflinks 8.922        
cufflinks 16.085     High  
cufflinks 16.32     High  
cufflinks 16.488     High  
cufflinks 6.411       Low
cufflinks 4.5       Low
cufflinks 11.42     High  
cufflinks 6.799       Low
cufflinks 29.214     High High
cufflinks 13.504     High  

0 Strain