Gene : Sobic.001G392800 S. bicolor v3.1.1
Defline:  (1 of 1) K03949 - NADH dehydrogenase (ubiquinone) 1 alpha subcomplex subunit 5 (NDUFA5) Genomic Order:  4111
Name:  ? Sobic.001G392800 Secondary Identifier:  ? PAC:37944614
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor PWY-3781 Sorghum bicolor pathologic  
Sbicolor PWY-4302 Sorghum bicolor pathologic  
Sbicolor PWY-5083 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G392800 0.5kb upstream 0.5kb upstream 2586 true Chr01: 67902772-67905357 Sorghum bicolor
Sobic.001G392800 0.5kb upstream 0.5kb upstream 500 false Chr01: 67904858-67905357 Sorghum bicolor
Sobic.001G392800 0.5kb downstream 0.5kb downstream 2586 true Chr01: 67902272-67904857 Sorghum bicolor
Sobic.001G392800 0.5kb downstream 0.5kb downstream 500 false Chr01: 67902272-67902771 Sorghum bicolor
Sobic.001G392800 1.0kb upstream 1.0kb upstream 3086 true Chr01: 67902772-67905857 Sorghum bicolor
Sobic.001G392800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 67904858-67905857 Sorghum bicolor
Sobic.001G392800 1.0kb downstream 1.0kb downstream 3086 true Chr01: 67901772-67904857 Sorghum bicolor
Sobic.001G392800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 67901772-67902771 Sorghum bicolor
Sobic.001G392800 2.0kb upstream 2.0kb upstream 4086 true Chr01: 67902772-67906857 Sorghum bicolor
Sobic.001G392800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 67904858-67906857 Sorghum bicolor
Sobic.001G392800 2.0kb downstream 2.0kb downstream 4086 true Chr01: 67900772-67904857 Sorghum bicolor
Sobic.001G392800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 67900772-67902771 Sorghum bicolor
Sobic.001G392800 5.0kb upstream 5.0kb upstream 7086 true Chr01: 67902772-67909857 Sorghum bicolor
Sobic.001G392800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 67904858-67909857 Sorghum bicolor
Sobic.001G392800 5.0kb downstream 5.0kb downstream 7086 true Chr01: 67897772-67904857 Sorghum bicolor
Sobic.001G392800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 67897772-67902771 Sorghum bicolor
Sobic.001G392800 10.0kb upstream 10.0kb upstream 12086 true Chr01: 67902772-67914857 Sorghum bicolor
Sobic.001G392800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 67904858-67914857 Sorghum bicolor
Sobic.001G392800 10.0kb downstream 10.0kb downstream 12086 true Chr01: 67892772-67904857 Sorghum bicolor
Sobic.001G392800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 67892772-67902771 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122180785 5267 Panicoideae View MSA
124569895 5269 Grass View MSA
122046813 5273 Angiosperm View MSA
121348614 5274 Embryophyte View MSA
123425136 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 114.907     High High
cufflinks 14.099     High Low
cufflinks 23.986     High Low
cufflinks 44.186     High  
cufflinks 42.589     High  
cufflinks 41.163     High  
cufflinks 37.755     High  
cufflinks 21.432     High Low
cufflinks 38.309     High  
cufflinks 48.354     High  
cufflinks 44.026     High  
cufflinks 38.675     High  
cufflinks 29.772     High  
cufflinks 56.755     High  
cufflinks 50.474     High  
cufflinks 28.725     High  
cufflinks 41.038     High  
cufflinks 41.021     High  
cufflinks 17.278     High Low
cufflinks 40.65     High  
cufflinks 42.137     High  
cufflinks 77.454     High High
cufflinks 57.208     High  
cufflinks 55.336     High  
cufflinks 12.938     High Low
cufflinks 12.804     High Low
cufflinks 31.786     High  
cufflinks 176.176     High High
cufflinks 39.977     High  
cufflinks 47.15     High  

0 Strain