Gene : Sobic.001G370500 S. bicolor v3.1.1
Defline:  (1 of 1) K14851 - ribosomal RNA-processing protein 17 (RRP17, NOL12) Genomic Order:  3880
Name:  ? Sobic.001G370500 Secondary Identifier:  ? PAC:37937876
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G370500 0.5kb upstream 0.5kb upstream 2878 true Chr01: 65900723-65903600 Sorghum bicolor
Sobic.001G370500 0.5kb upstream 0.5kb upstream 500 false Chr01: 65903101-65903600 Sorghum bicolor
Sobic.001G370500 0.5kb downstream 0.5kb downstream 2878 true Chr01: 65900223-65903100 Sorghum bicolor
Sobic.001G370500 0.5kb downstream 0.5kb downstream 500 false Chr01: 65900223-65900722 Sorghum bicolor
Sobic.001G370500 1.0kb upstream 1.0kb upstream 3378 true Chr01: 65900723-65904100 Sorghum bicolor
Sobic.001G370500 1.0kb upstream 1.0kb upstream 1000 false Chr01: 65903101-65904100 Sorghum bicolor
Sobic.001G370500 1.0kb downstream 1.0kb downstream 3378 true Chr01: 65899723-65903100 Sorghum bicolor
Sobic.001G370500 1.0kb downstream 1.0kb downstream 1000 false Chr01: 65899723-65900722 Sorghum bicolor
Sobic.001G370500 2.0kb upstream 2.0kb upstream 4378 true Chr01: 65900723-65905100 Sorghum bicolor
Sobic.001G370500 2.0kb upstream 2.0kb upstream 2000 false Chr01: 65903101-65905100 Sorghum bicolor
Sobic.001G370500 2.0kb downstream 2.0kb downstream 4378 true Chr01: 65898723-65903100 Sorghum bicolor
Sobic.001G370500 2.0kb downstream 2.0kb downstream 2000 false Chr01: 65898723-65900722 Sorghum bicolor
Sobic.001G370500 5.0kb upstream 5.0kb upstream 7378 true Chr01: 65900723-65908100 Sorghum bicolor
Sobic.001G370500 5.0kb upstream 5.0kb upstream 5000 false Chr01: 65903101-65908100 Sorghum bicolor
Sobic.001G370500 5.0kb downstream 5.0kb downstream 7378 true Chr01: 65895723-65903100 Sorghum bicolor
Sobic.001G370500 5.0kb downstream 5.0kb downstream 5000 false Chr01: 65895723-65900722 Sorghum bicolor
Sobic.001G370500 10.0kb upstream 10.0kb upstream 12378 true Chr01: 65900723-65913100 Sorghum bicolor
Sobic.001G370500 10.0kb upstream 10.0kb upstream 10000 false Chr01: 65903101-65913100 Sorghum bicolor
Sobic.001G370500 10.0kb downstream 10.0kb downstream 12378 true Chr01: 65890723-65903100 Sorghum bicolor
Sobic.001G370500 10.0kb downstream 10.0kb downstream 10000 false Chr01: 65890723-65900722 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041503 5273 Angiosperm View MSA
122191301 5267 Panicoideae View MSA
124580069 5269 Grass View MSA
121347582 5274 Embryophyte View MSA
123426889 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.251     High High
cufflinks 2.571       Low
cufflinks 4.965       Low
cufflinks 8.942        
cufflinks 9.775        
cufflinks 7.588        
cufflinks 10.158        
cufflinks 3.702       Low
cufflinks 11.01        
cufflinks 11.646        
cufflinks 8.78        
cufflinks 12.195     High  
cufflinks 10.499        
cufflinks 12.663     High  
cufflinks 8.717        
cufflinks 5.328       Low
cufflinks 11.83     High  
cufflinks 11.756     High  
cufflinks 8.806        
cufflinks 14.024     High  
cufflinks 18.93     High High
cufflinks 9.188        
cufflinks 13.829     High  
cufflinks 13.004     High  
cufflinks 4.136       Low
cufflinks 2.64       Low
cufflinks 7.036        
cufflinks 6.24        
cufflinks 7.928        
cufflinks 12.339     High  

0 Strain