Gene : Sobic.001G365800 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR11592:SF17 - GLUTATHIONE PEROXIDASE 4-RELATED Genomic Order:  3835
Name:  ? Sobic.001G365800 Secondary Identifier:  ? PAC:37937728
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor DETOX1-PWY-1 Sorghum bicolor pathologic  
Sbicolor PWY-4081 Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G365800 0.5kb upstream 0.5kb upstream 3121 true Chr01: 65429213-65432333 Sorghum bicolor
Sobic.001G365800 0.5kb upstream 0.5kb upstream 500 false Chr01: 65431834-65432333 Sorghum bicolor
Sobic.001G365800 0.5kb downstream 0.5kb downstream 3121 true Chr01: 65428713-65431833 Sorghum bicolor
Sobic.001G365800 0.5kb downstream 0.5kb downstream 500 false Chr01: 65428713-65429212 Sorghum bicolor
Sobic.001G365800 1.0kb upstream 1.0kb upstream 3621 true Chr01: 65429213-65432833 Sorghum bicolor
Sobic.001G365800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 65431834-65432833 Sorghum bicolor
Sobic.001G365800 1.0kb downstream 1.0kb downstream 3621 true Chr01: 65428213-65431833 Sorghum bicolor
Sobic.001G365800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 65428213-65429212 Sorghum bicolor
Sobic.001G365800 2.0kb upstream 2.0kb upstream 4621 true Chr01: 65429213-65433833 Sorghum bicolor
Sobic.001G365800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 65431834-65433833 Sorghum bicolor
Sobic.001G365800 2.0kb downstream 2.0kb downstream 4621 true Chr01: 65427213-65431833 Sorghum bicolor
Sobic.001G365800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 65427213-65429212 Sorghum bicolor
Sobic.001G365800 5.0kb upstream 5.0kb upstream 7621 true Chr01: 65429213-65436833 Sorghum bicolor
Sobic.001G365800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 65431834-65436833 Sorghum bicolor
Sobic.001G365800 5.0kb downstream 5.0kb downstream 7621 true Chr01: 65424213-65431833 Sorghum bicolor
Sobic.001G365800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 65424213-65429212 Sorghum bicolor
Sobic.001G365800 10.0kb upstream 10.0kb upstream 12621 true Chr01: 65429213-65441833 Sorghum bicolor
Sobic.001G365800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 65431834-65441833 Sorghum bicolor
Sobic.001G365800 10.0kb downstream 10.0kb downstream 12621 true Chr01: 65419213-65431833 Sorghum bicolor
Sobic.001G365800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 65419213-65429212 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026200 5273 Angiosperm View MSA
122188732 5267 Panicoideae View MSA
124577446 5269 Grass View MSA
121296225 5274 Embryophyte View MSA
123426849 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 19.45     High  
cufflinks 9.22     High  
cufflinks 28.841     High High
cufflinks 36.169     High High
cufflinks 25.52     High High
cufflinks 24.475     High High
cufflinks 9.6        
cufflinks 7.372       Low
cufflinks 14.747     High  
cufflinks 15.946     High  
cufflinks 9.922        
cufflinks 11.254        
cufflinks 11.486     High  
cufflinks 8.669        
cufflinks 21.724     High High
cufflinks 22.142     High High
cufflinks 10.904        
cufflinks 10.469        
cufflinks 20.287     High  
cufflinks 19.804     High  
cufflinks 8.879        
cufflinks 8.306       Low
cufflinks 8.569       Low
cufflinks 8.451       Low
cufflinks 16.763     High  
cufflinks 7.438     High Low
cufflinks 15.987     High  
cufflinks 21.515     High High
cufflinks 7.845       Low
cufflinks 15.384     High  

0 Strain