Gene : Sobic.001G367800 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR13247//PTHR13247:SF2 - TETRATRICOPEPTIDE REPEAT PROTEIN 11 TPR REPEAT PROTEIN 11 // SUBFAMILY NOT NAMED Genomic Order:  3853
Name:  ? Sobic.001G367800 Secondary Identifier:  ? PAC:37938904
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G367800 0.5kb upstream 0.5kb upstream 4166 true Chr01: 65676168-65680333 Sorghum bicolor
Sobic.001G367800 0.5kb upstream 0.5kb upstream 500 false Chr01: 65676168-65676667 Sorghum bicolor
Sobic.001G367800 0.5kb downstream 0.5kb downstream 4166 true Chr01: 65676668-65680833 Sorghum bicolor
Sobic.001G367800 0.5kb downstream 0.5kb downstream 500 false Chr01: 65680334-65680833 Sorghum bicolor
Sobic.001G367800 1.0kb upstream 1.0kb upstream 4666 true Chr01: 65675668-65680333 Sorghum bicolor
Sobic.001G367800 1.0kb upstream 1.0kb upstream 1000 false Chr01: 65675668-65676667 Sorghum bicolor
Sobic.001G367800 1.0kb downstream 1.0kb downstream 4666 true Chr01: 65676668-65681333 Sorghum bicolor
Sobic.001G367800 1.0kb downstream 1.0kb downstream 1000 false Chr01: 65680334-65681333 Sorghum bicolor
Sobic.001G367800 2.0kb upstream 2.0kb upstream 5666 true Chr01: 65674668-65680333 Sorghum bicolor
Sobic.001G367800 2.0kb upstream 2.0kb upstream 2000 false Chr01: 65674668-65676667 Sorghum bicolor
Sobic.001G367800 2.0kb downstream 2.0kb downstream 5666 true Chr01: 65676668-65682333 Sorghum bicolor
Sobic.001G367800 2.0kb downstream 2.0kb downstream 2000 false Chr01: 65680334-65682333 Sorghum bicolor
Sobic.001G367800 5.0kb upstream 5.0kb upstream 8666 true Chr01: 65671668-65680333 Sorghum bicolor
Sobic.001G367800 5.0kb upstream 5.0kb upstream 5000 false Chr01: 65671668-65676667 Sorghum bicolor
Sobic.001G367800 5.0kb downstream 5.0kb downstream 8666 true Chr01: 65676668-65685333 Sorghum bicolor
Sobic.001G367800 5.0kb downstream 5.0kb downstream 5000 false Chr01: 65680334-65685333 Sorghum bicolor
Sobic.001G367800 10.0kb upstream 10.0kb upstream 13666 true Chr01: 65666668-65680333 Sorghum bicolor
Sobic.001G367800 10.0kb upstream 10.0kb upstream 10000 false Chr01: 65666668-65676667 Sorghum bicolor
Sobic.001G367800 10.0kb downstream 10.0kb downstream 13666 true Chr01: 65676668-65690333 Sorghum bicolor
Sobic.001G367800 10.0kb downstream 10.0kb downstream 10000 false Chr01: 65680334-65690333 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122177333 5267 Panicoideae View MSA
124577122 5269 Grass View MSA
122046203 5273 Angiosperm View MSA
123429111 5275 Viridiplantae View MSA
121347777 5274 Embryophyte View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.956        
cufflinks 1.486       Low
cufflinks 10.805     High High
cufflinks 21.593     High High
cufflinks 6.1        
cufflinks 3.159        
cufflinks 2.151        
cufflinks 1.321       Low
cufflinks 3.629        
cufflinks 5.349        
cufflinks 2.519        
cufflinks 2.236        
cufflinks 13.656     High High
cufflinks 2.376        
cufflinks 36.594     High High
cufflinks 5.053        
cufflinks 2.679        
cufflinks 2.277        
cufflinks 3.399        
cufflinks 2.939        
cufflinks 4.472        
cufflinks 1.875        
cufflinks 3.464        
cufflinks 2.91        
cufflinks 0.938       Low
cufflinks 0.887       Low
cufflinks 11.089       High
cufflinks 6.901        
cufflinks 1.572       Low
cufflinks 18.659     High High

0 Strain