Gene : Sobic.001G488100 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR23198:SF0 - NUCLEAR PORE COMPLEX PROTEIN NUP96 HOMOLOG Genomic Order:  5119
Name:  ? Sobic.001G488100 Secondary Identifier:  ? PAC:37938324
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G488100 0.5kb upstream 0.5kb upstream 4759 true Chr01: 75797357-75802115 Sorghum bicolor
Sobic.001G488100 0.5kb upstream 0.5kb upstream 500 false Chr01: 75801616-75802115 Sorghum bicolor
Sobic.001G488100 0.5kb downstream 0.5kb downstream 4759 true Chr01: 75796857-75801615 Sorghum bicolor
Sobic.001G488100 0.5kb downstream 0.5kb downstream 500 false Chr01: 75796857-75797356 Sorghum bicolor
Sobic.001G488100 1.0kb upstream 1.0kb upstream 5259 true Chr01: 75797357-75802615 Sorghum bicolor
Sobic.001G488100 1.0kb upstream 1.0kb upstream 1000 false Chr01: 75801616-75802615 Sorghum bicolor
Sobic.001G488100 1.0kb downstream 1.0kb downstream 5259 true Chr01: 75796357-75801615 Sorghum bicolor
Sobic.001G488100 1.0kb downstream 1.0kb downstream 1000 false Chr01: 75796357-75797356 Sorghum bicolor
Sobic.001G488100 2.0kb upstream 2.0kb upstream 6259 true Chr01: 75797357-75803615 Sorghum bicolor
Sobic.001G488100 2.0kb upstream 2.0kb upstream 2000 false Chr01: 75801616-75803615 Sorghum bicolor
Sobic.001G488100 2.0kb downstream 2.0kb downstream 6259 true Chr01: 75795357-75801615 Sorghum bicolor
Sobic.001G488100 2.0kb downstream 2.0kb downstream 2000 false Chr01: 75795357-75797356 Sorghum bicolor
Sobic.001G488100 5.0kb upstream 5.0kb upstream 9259 true Chr01: 75797357-75806615 Sorghum bicolor
Sobic.001G488100 5.0kb upstream 5.0kb upstream 5000 false Chr01: 75801616-75806615 Sorghum bicolor
Sobic.001G488100 5.0kb downstream 5.0kb downstream 9259 true Chr01: 75792357-75801615 Sorghum bicolor
Sobic.001G488100 5.0kb downstream 5.0kb downstream 5000 false Chr01: 75792357-75797356 Sorghum bicolor
Sobic.001G488100 10.0kb upstream 10.0kb upstream 14259 true Chr01: 75797357-75811615 Sorghum bicolor
Sobic.001G488100 10.0kb upstream 10.0kb upstream 10000 false Chr01: 75801616-75811615 Sorghum bicolor
Sobic.001G488100 10.0kb downstream 10.0kb downstream 14259 true Chr01: 75787357-75801615 Sorghum bicolor
Sobic.001G488100 10.0kb downstream 10.0kb downstream 10000 false Chr01: 75787357-75797356 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196186 5267 Panicoideae View MSA
124588760 5269 Grass View MSA
122043247 5273 Angiosperm View MSA
121310093 5274 Embryophyte View MSA
123347679 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.67     High  
cufflinks 1.159       Low
cufflinks 4.574       Low
cufflinks 5.861        
cufflinks 22.041     High  
cufflinks 7.294        
cufflinks 14.246     High  
cufflinks 2.73       Low
cufflinks 14.45     High  
cufflinks 16.14     High  
cufflinks 17.045     High  
cufflinks 19.486     High  
cufflinks 11.871     High  
cufflinks 21.121     High  
cufflinks 11.656        
cufflinks 3.414       Low
cufflinks 14.879     High  
cufflinks 15.93     High  
cufflinks 3.888       Low
cufflinks 13.819     High  
cufflinks 38.265     High High
cufflinks 23.803     High  
cufflinks 25.275     High  
cufflinks 27.337     High  
cufflinks 3.061       Low
cufflinks 1.109       Low
cufflinks 11.94     High  
cufflinks 3.489       Low
cufflinks 8.143        
cufflinks 18.973     High  

0 Strain