Gene : Sobic.005G108801 S. bicolor v3.1.1
Defline:  (1 of 1) PF02037//PF10172 - SAP domain (SAP) // Det1 complexing ubiquitin ligase (DDA1) Genomic Order:  1124
Name:  ? Sobic.005G108801 Secondary Identifier:  ? PAC:37924268
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.005G108801 0.5kb upstream 0.5kb upstream 17501 true Chr05: 21058607-21076107 Sorghum bicolor
Sobic.005G108801 0.5kb upstream 0.5kb upstream 500 false Chr05: 21075608-21076107 Sorghum bicolor
Sobic.005G108801 0.5kb downstream 0.5kb downstream 17501 true Chr05: 21058107-21075607 Sorghum bicolor
Sobic.005G108801 0.5kb downstream 0.5kb downstream 500 false Chr05: 21058107-21058606 Sorghum bicolor
Sobic.005G108801 1.0kb upstream 1.0kb upstream 18001 true Chr05: 21058607-21076607 Sorghum bicolor
Sobic.005G108801 1.0kb upstream 1.0kb upstream 1000 false Chr05: 21075608-21076607 Sorghum bicolor
Sobic.005G108801 1.0kb downstream 1.0kb downstream 18001 true Chr05: 21057607-21075607 Sorghum bicolor
Sobic.005G108801 1.0kb downstream 1.0kb downstream 1000 false Chr05: 21057607-21058606 Sorghum bicolor
Sobic.005G108801 2.0kb upstream 2.0kb upstream 19001 true Chr05: 21058607-21077607 Sorghum bicolor
Sobic.005G108801 2.0kb upstream 2.0kb upstream 2000 false Chr05: 21075608-21077607 Sorghum bicolor
Sobic.005G108801 2.0kb downstream 2.0kb downstream 19001 true Chr05: 21056607-21075607 Sorghum bicolor
Sobic.005G108801 2.0kb downstream 2.0kb downstream 2000 false Chr05: 21056607-21058606 Sorghum bicolor
Sobic.005G108801 5.0kb upstream 5.0kb upstream 22001 true Chr05: 21058607-21080607 Sorghum bicolor
Sobic.005G108801 5.0kb upstream 5.0kb upstream 5000 false Chr05: 21075608-21080607 Sorghum bicolor
Sobic.005G108801 5.0kb downstream 5.0kb downstream 22001 true Chr05: 21053607-21075607 Sorghum bicolor
Sobic.005G108801 5.0kb downstream 5.0kb downstream 5000 false Chr05: 21053607-21058606 Sorghum bicolor
Sobic.005G108801 10.0kb upstream 10.0kb upstream 27001 true Chr05: 21058607-21085607 Sorghum bicolor
Sobic.005G108801 10.0kb upstream 10.0kb upstream 10000 false Chr05: 21075608-21085607 Sorghum bicolor
Sobic.005G108801 10.0kb downstream 10.0kb downstream 27001 true Chr05: 21048607-21075607 Sorghum bicolor
Sobic.005G108801 10.0kb downstream 10.0kb downstream 10000 false Chr05: 21048607-21058606 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122196793 5267 Panicoideae View MSA
124588892 5269 Grass View MSA
122045612 5273 Angiosperm View MSA
121347246 5274 Embryophyte View MSA
123425668 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.529       High
cufflinks 0.164       Low
cufflinks 0.512        
cufflinks 1.029       High
cufflinks 0.862        
cufflinks 0.751        
cufflinks 0.587        
cufflinks 0.231       Low
cufflinks 0.64        
cufflinks 0.655        
cufflinks 0.543        
cufflinks 0.482        
cufflinks 0.54        
cufflinks 0.466        
cufflinks 0.882        
cufflinks 0.371        
cufflinks 0.604        
cufflinks 0.656        
cufflinks 0.251       Low
cufflinks 0.615        
cufflinks 1.322       High
cufflinks 0.775        
cufflinks 0.58        
cufflinks 0.57        
cufflinks 0.249       Low
cufflinks 0.126       Low
cufflinks 0.482        
cufflinks 0.562        
cufflinks 0.436        
cufflinks 1.201       High

0 Strain