Gene : Sobic.001G476300 S. bicolor v3.1.1
Defline:  (1 of 22) PF00046//PF02183 - Homeobox domain (Homeobox) // Homeobox associated leucine zipper (HALZ) Genomic Order:  5002
Name:  ? Sobic.001G476300 Secondary Identifier:  ? PAC:37944297
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G476300 0.5kb upstream 0.5kb upstream 3051 true Chr01: 74847424-74850474 Sorghum bicolor
Sobic.001G476300 0.5kb upstream 0.5kb upstream 500 false Chr01: 74847424-74847923 Sorghum bicolor
Sobic.001G476300 0.5kb downstream 0.5kb downstream 3051 true Chr01: 74847924-74850974 Sorghum bicolor
Sobic.001G476300 0.5kb downstream 0.5kb downstream 500 false Chr01: 74850475-74850974 Sorghum bicolor
Sobic.001G476300 1.0kb upstream 1.0kb upstream 3551 true Chr01: 74846924-74850474 Sorghum bicolor
Sobic.001G476300 1.0kb upstream 1.0kb upstream 1000 false Chr01: 74846924-74847923 Sorghum bicolor
Sobic.001G476300 1.0kb downstream 1.0kb downstream 3551 true Chr01: 74847924-74851474 Sorghum bicolor
Sobic.001G476300 1.0kb downstream 1.0kb downstream 1000 false Chr01: 74850475-74851474 Sorghum bicolor
Sobic.001G476300 2.0kb upstream 2.0kb upstream 4551 true Chr01: 74845924-74850474 Sorghum bicolor
Sobic.001G476300 2.0kb upstream 2.0kb upstream 2000 false Chr01: 74845924-74847923 Sorghum bicolor
Sobic.001G476300 2.0kb downstream 2.0kb downstream 4551 true Chr01: 74847924-74852474 Sorghum bicolor
Sobic.001G476300 2.0kb downstream 2.0kb downstream 2000 false Chr01: 74850475-74852474 Sorghum bicolor
Sobic.001G476300 5.0kb upstream 5.0kb upstream 7551 true Chr01: 74842924-74850474 Sorghum bicolor
Sobic.001G476300 5.0kb upstream 5.0kb upstream 5000 false Chr01: 74842924-74847923 Sorghum bicolor
Sobic.001G476300 5.0kb downstream 5.0kb downstream 7551 true Chr01: 74847924-74855474 Sorghum bicolor
Sobic.001G476300 5.0kb downstream 5.0kb downstream 5000 false Chr01: 74850475-74855474 Sorghum bicolor
Sobic.001G476300 10.0kb upstream 10.0kb upstream 12551 true Chr01: 74837924-74850474 Sorghum bicolor
Sobic.001G476300 10.0kb upstream 10.0kb upstream 10000 false Chr01: 74837924-74847923 Sorghum bicolor
Sobic.001G476300 10.0kb downstream 10.0kb downstream 12551 true Chr01: 74847924-74860474 Sorghum bicolor
Sobic.001G476300 10.0kb downstream 10.0kb downstream 10000 false Chr01: 74850475-74860474 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122197892 5267 Panicoideae View MSA
124580155 5269 Grass View MSA
122049195 5273 Angiosperm View MSA
121351579 5274 Embryophyte View MSA
123382235 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.839        
cufflinks 0.104       Low
cufflinks 0.253       Low
cufflinks 1.037        
cufflinks 1.909        
cufflinks 2.359        
cufflinks 2.726        
cufflinks 1.591        
cufflinks 1.512        
cufflinks 2.337        
cufflinks 11.371        
cufflinks 15.962     High High
cufflinks 2.314        
cufflinks 16.452     High High
cufflinks 4.398        
cufflinks 0.183       Low
cufflinks 3.267        
cufflinks 2.648        
cufflinks 0.787        
cufflinks 5.388        
cufflinks 15.034     High High
cufflinks 14.926     High High
cufflinks 18.779     High High
cufflinks 15.23     High High
cufflinks 1.815        
cufflinks 0.33       Low
cufflinks 8.76        
cufflinks 0.027     Low Low
cufflinks 2.108        
cufflinks 8.126        

0 Strain