Gene : Sobic.001G468600 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR11778//PTHR11778:SF7 - SERYL-TRNA SYNTHETASE // SERINE--TRNA LIGASE, CYTOPLASMIC Genomic Order:  4921
Name:  ? Sobic.001G468600 Secondary Identifier:  ? PAC:37938113
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor TRNA-CHARGING-PWY Sorghum bicolor pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G468600 0.5kb upstream 0.5kb upstream 4258 true Chr01: 74146293-74150550 Sorghum bicolor
Sobic.001G468600 0.5kb upstream 0.5kb upstream 500 false Chr01: 74150051-74150550 Sorghum bicolor
Sobic.001G468600 0.5kb downstream 0.5kb downstream 4258 true Chr01: 74145793-74150050 Sorghum bicolor
Sobic.001G468600 0.5kb downstream 0.5kb downstream 500 false Chr01: 74145793-74146292 Sorghum bicolor
Sobic.001G468600 1.0kb upstream 1.0kb upstream 4758 true Chr01: 74146293-74151050 Sorghum bicolor
Sobic.001G468600 1.0kb upstream 1.0kb upstream 1000 false Chr01: 74150051-74151050 Sorghum bicolor
Sobic.001G468600 1.0kb downstream 1.0kb downstream 4758 true Chr01: 74145293-74150050 Sorghum bicolor
Sobic.001G468600 1.0kb downstream 1.0kb downstream 1000 false Chr01: 74145293-74146292 Sorghum bicolor
Sobic.001G468600 2.0kb upstream 2.0kb upstream 5758 true Chr01: 74146293-74152050 Sorghum bicolor
Sobic.001G468600 2.0kb upstream 2.0kb upstream 2000 false Chr01: 74150051-74152050 Sorghum bicolor
Sobic.001G468600 2.0kb downstream 2.0kb downstream 5758 true Chr01: 74144293-74150050 Sorghum bicolor
Sobic.001G468600 2.0kb downstream 2.0kb downstream 2000 false Chr01: 74144293-74146292 Sorghum bicolor
Sobic.001G468600 5.0kb upstream 5.0kb upstream 8758 true Chr01: 74146293-74155050 Sorghum bicolor
Sobic.001G468600 5.0kb upstream 5.0kb upstream 5000 false Chr01: 74150051-74155050 Sorghum bicolor
Sobic.001G468600 5.0kb downstream 5.0kb downstream 8758 true Chr01: 74141293-74150050 Sorghum bicolor
Sobic.001G468600 5.0kb downstream 5.0kb downstream 5000 false Chr01: 74141293-74146292 Sorghum bicolor
Sobic.001G468600 10.0kb upstream 10.0kb upstream 13758 true Chr01: 74146293-74160050 Sorghum bicolor
Sobic.001G468600 10.0kb upstream 10.0kb upstream 10000 false Chr01: 74150051-74160050 Sorghum bicolor
Sobic.001G468600 10.0kb downstream 10.0kb downstream 13758 true Chr01: 74136293-74150050 Sorghum bicolor
Sobic.001G468600 10.0kb downstream 10.0kb downstream 10000 false Chr01: 74136293-74146292 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186401 5267 Panicoideae View MSA
124589180 5269 Grass View MSA
122041756 5273 Angiosperm View MSA
121347508 5274 Embryophyte View MSA
123423893 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 69.514     High High
cufflinks 5.49       Low
cufflinks 18.472     High  
cufflinks 31.037     High  
cufflinks 26.183     High  
cufflinks 21.897     High  
cufflinks 29.577     High  
cufflinks 10.14     High Low
cufflinks 32.214     High  
cufflinks 32.368     High  
cufflinks 41.274     High  
cufflinks 35.222     High  
cufflinks 21.567     High  
cufflinks 43.885     High  
cufflinks 24.636     High  
cufflinks 12.117     High Low
cufflinks 35.28     High  
cufflinks 37.197     High  
cufflinks 10.36       Low
cufflinks 30.973     High  
cufflinks 32.859     High  
cufflinks 59.823     High High
cufflinks 50.188     High  
cufflinks 51.729     High High
cufflinks 9.083     High Low
cufflinks 5.21       Low
cufflinks 33.317     High  
cufflinks 10.575     High Low
cufflinks 34.312     High  
cufflinks 36.682     High  

0 Strain