Gene : Sobic.005G111900 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR12608//PTHR12608:SF5 - TRANSMEMBRANE PROTEIN HTP-1 RELATED // SUBFAMILY NOT NAMED Genomic Order:  1213
Name:  ? Sobic.005G111900 Secondary Identifier:  ? PAC:37925563
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.005G111900 0.5kb upstream 0.5kb upstream 4576 true Chr05: 37302381-37306956 Sorghum bicolor
Sobic.005G111900 0.5kb upstream 0.5kb upstream 500 false Chr05: 37302381-37302880 Sorghum bicolor
Sobic.005G111900 0.5kb downstream 0.5kb downstream 4576 true Chr05: 37302881-37307456 Sorghum bicolor
Sobic.005G111900 0.5kb downstream 0.5kb downstream 500 false Chr05: 37306957-37307456 Sorghum bicolor
Sobic.005G111900 1.0kb upstream 1.0kb upstream 5076 true Chr05: 37301881-37306956 Sorghum bicolor
Sobic.005G111900 1.0kb upstream 1.0kb upstream 1000 false Chr05: 37301881-37302880 Sorghum bicolor
Sobic.005G111900 1.0kb downstream 1.0kb downstream 5076 true Chr05: 37302881-37307956 Sorghum bicolor
Sobic.005G111900 1.0kb downstream 1.0kb downstream 1000 false Chr05: 37306957-37307956 Sorghum bicolor
Sobic.005G111900 2.0kb upstream 2.0kb upstream 6076 true Chr05: 37300881-37306956 Sorghum bicolor
Sobic.005G111900 2.0kb upstream 2.0kb upstream 2000 false Chr05: 37300881-37302880 Sorghum bicolor
Sobic.005G111900 2.0kb downstream 2.0kb downstream 6076 true Chr05: 37302881-37308956 Sorghum bicolor
Sobic.005G111900 2.0kb downstream 2.0kb downstream 2000 false Chr05: 37306957-37308956 Sorghum bicolor
Sobic.005G111900 5.0kb upstream 5.0kb upstream 9076 true Chr05: 37297881-37306956 Sorghum bicolor
Sobic.005G111900 5.0kb upstream 5.0kb upstream 5000 false Chr05: 37297881-37302880 Sorghum bicolor
Sobic.005G111900 5.0kb downstream 5.0kb downstream 9076 true Chr05: 37302881-37311956 Sorghum bicolor
Sobic.005G111900 5.0kb downstream 5.0kb downstream 5000 false Chr05: 37306957-37311956 Sorghum bicolor
Sobic.005G111900 10.0kb upstream 10.0kb upstream 14076 true Chr05: 37292881-37306956 Sorghum bicolor
Sobic.005G111900 10.0kb upstream 10.0kb upstream 10000 false Chr05: 37292881-37302880 Sorghum bicolor
Sobic.005G111900 10.0kb downstream 10.0kb downstream 14076 true Chr05: 37302881-37316956 Sorghum bicolor
Sobic.005G111900 10.0kb downstream 10.0kb downstream 10000 false Chr05: 37306957-37316956 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186640 5267 Panicoideae View MSA
124585153 5269 Grass View MSA
122047998 5273 Angiosperm View MSA
121345967 5274 Embryophyte View MSA
123428725 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.629        
cufflinks 2.512       Low
cufflinks 3.466        
cufflinks 3.923        
cufflinks 2.99       Low
cufflinks 3.58        
cufflinks 4.584        
cufflinks 3.576        
cufflinks 4.055        
cufflinks 4.663        
cufflinks 5.025        
cufflinks 6.231       High
cufflinks 4.397        
cufflinks 6.025       High
cufflinks 5.261        
cufflinks 3.799        
cufflinks 5.079        
cufflinks 5.12        
cufflinks 2.339       Low
cufflinks 5.993       High
cufflinks 3.097        
cufflinks 5.733        
cufflinks 6.277       High
cufflinks 5.809       High
cufflinks 3.886        
cufflinks 2.564       Low
cufflinks 5.081        
cufflinks 1.356       Low
cufflinks 5.123        
cufflinks 5.469        

0 Strain