Gene : Sobic.001G461700 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR11946//PTHR11946:SF89 - ISOLEUCYL, LEUCYL, TYROSYL, VALYL AND METHIONYL-TRNA SYNTHETASES // METHIONYL-TRNA SYNTHETASE Genomic Order:  4849
Name:  ? Sobic.001G461700 Secondary Identifier:  ? PAC:37942066
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Sbicolor TRNA-CHARGING-PWY Sorghum bicolor pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G461700 0.5kb upstream 0.5kb upstream 7691 true Chr01: 73643596-73651286 Sorghum bicolor
Sobic.001G461700 0.5kb upstream 0.5kb upstream 500 false Chr01: 73643596-73644095 Sorghum bicolor
Sobic.001G461700 0.5kb downstream 0.5kb downstream 7691 true Chr01: 73644096-73651786 Sorghum bicolor
Sobic.001G461700 0.5kb downstream 0.5kb downstream 500 false Chr01: 73651287-73651786 Sorghum bicolor
Sobic.001G461700 1.0kb upstream 1.0kb upstream 8191 true Chr01: 73643096-73651286 Sorghum bicolor
Sobic.001G461700 1.0kb upstream 1.0kb upstream 1000 false Chr01: 73643096-73644095 Sorghum bicolor
Sobic.001G461700 1.0kb downstream 1.0kb downstream 8191 true Chr01: 73644096-73652286 Sorghum bicolor
Sobic.001G461700 1.0kb downstream 1.0kb downstream 1000 false Chr01: 73651287-73652286 Sorghum bicolor
Sobic.001G461700 2.0kb upstream 2.0kb upstream 9191 true Chr01: 73642096-73651286 Sorghum bicolor
Sobic.001G461700 2.0kb upstream 2.0kb upstream 2000 false Chr01: 73642096-73644095 Sorghum bicolor
Sobic.001G461700 2.0kb downstream 2.0kb downstream 9191 true Chr01: 73644096-73653286 Sorghum bicolor
Sobic.001G461700 2.0kb downstream 2.0kb downstream 2000 false Chr01: 73651287-73653286 Sorghum bicolor
Sobic.001G461700 5.0kb upstream 5.0kb upstream 12191 true Chr01: 73639096-73651286 Sorghum bicolor
Sobic.001G461700 5.0kb upstream 5.0kb upstream 5000 false Chr01: 73639096-73644095 Sorghum bicolor
Sobic.001G461700 5.0kb downstream 5.0kb downstream 12191 true Chr01: 73644096-73656286 Sorghum bicolor
Sobic.001G461700 5.0kb downstream 5.0kb downstream 5000 false Chr01: 73651287-73656286 Sorghum bicolor
Sobic.001G461700 10.0kb upstream 10.0kb upstream 17191 true Chr01: 73634096-73651286 Sorghum bicolor
Sobic.001G461700 10.0kb upstream 10.0kb upstream 10000 false Chr01: 73634096-73644095 Sorghum bicolor
Sobic.001G461700 10.0kb downstream 10.0kb downstream 17191 true Chr01: 73644096-73661286 Sorghum bicolor
Sobic.001G461700 10.0kb downstream 10.0kb downstream 10000 false Chr01: 73651287-73661286 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122186015 5267 Panicoideae View MSA
124574051 5269 Grass View MSA
122046373 5273 Angiosperm View MSA
121347151 5274 Embryophyte View MSA
123428788 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.287        
cufflinks 2.385        
cufflinks 3.71        
cufflinks 2.861        
cufflinks 2.621        
cufflinks 2.513        
cufflinks 9.281       High
cufflinks 8.73     High High
cufflinks 2.367        
cufflinks 2.327        
cufflinks 1.199        
cufflinks 1.462        
cufflinks 1.108       Low
cufflinks 1.122       Low
cufflinks 2.435        
cufflinks 3.028        
cufflinks 9.732       High
cufflinks 12.126     High High
cufflinks 3.042        
cufflinks 4.173        
cufflinks 3.84        
cufflinks 1.497        
cufflinks 1.613        
cufflinks 1.628        
cufflinks 1.279        
cufflinks 2.311        
cufflinks 1.3        
cufflinks 1.297        
cufflinks 23.648     High High
cufflinks 4.291        

0 Strain