Gene : Sobic.005G116200 S. bicolor v3.1.1
Defline:  (1 of 1) 1.14.11.33//4.2.99.18 - DNA oxidative demethylase / Alkylated DNA repair protein // DNA-(apurinic or apyrimidinic site) lyase / Phage-T4 UV endonuclease Genomic Order:  1252
Name:  ? Sobic.005G116200 Secondary Identifier:  ? PAC:37924249
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.005G116200 0.5kb upstream 0.5kb upstream 6580 true Chr05: 50851833-50858412 Sorghum bicolor
Sobic.005G116200 0.5kb upstream 0.5kb upstream 500 false Chr05: 50857913-50858412 Sorghum bicolor
Sobic.005G116200 0.5kb downstream 0.5kb downstream 6580 true Chr05: 50851333-50857912 Sorghum bicolor
Sobic.005G116200 0.5kb downstream 0.5kb downstream 500 false Chr05: 50851333-50851832 Sorghum bicolor
Sobic.005G116200 1.0kb upstream 1.0kb upstream 7080 true Chr05: 50851833-50858912 Sorghum bicolor
Sobic.005G116200 1.0kb upstream 1.0kb upstream 1000 false Chr05: 50857913-50858912 Sorghum bicolor
Sobic.005G116200 1.0kb downstream 1.0kb downstream 7080 true Chr05: 50850833-50857912 Sorghum bicolor
Sobic.005G116200 1.0kb downstream 1.0kb downstream 1000 false Chr05: 50850833-50851832 Sorghum bicolor
Sobic.005G116200 2.0kb upstream 2.0kb upstream 8080 true Chr05: 50851833-50859912 Sorghum bicolor
Sobic.005G116200 2.0kb upstream 2.0kb upstream 2000 false Chr05: 50857913-50859912 Sorghum bicolor
Sobic.005G116200 2.0kb downstream 2.0kb downstream 8080 true Chr05: 50849833-50857912 Sorghum bicolor
Sobic.005G116200 2.0kb downstream 2.0kb downstream 2000 false Chr05: 50849833-50851832 Sorghum bicolor
Sobic.005G116200 5.0kb upstream 5.0kb upstream 11080 true Chr05: 50851833-50862912 Sorghum bicolor
Sobic.005G116200 5.0kb upstream 5.0kb upstream 5000 false Chr05: 50857913-50862912 Sorghum bicolor
Sobic.005G116200 5.0kb downstream 5.0kb downstream 11080 true Chr05: 50846833-50857912 Sorghum bicolor
Sobic.005G116200 5.0kb downstream 5.0kb downstream 5000 false Chr05: 50846833-50851832 Sorghum bicolor
Sobic.005G116200 10.0kb upstream 10.0kb upstream 16080 true Chr05: 50851833-50867912 Sorghum bicolor
Sobic.005G116200 10.0kb upstream 10.0kb upstream 10000 false Chr05: 50857913-50867912 Sorghum bicolor
Sobic.005G116200 10.0kb downstream 10.0kb downstream 16080 true Chr05: 50841833-50857912 Sorghum bicolor
Sobic.005G116200 10.0kb downstream 10.0kb downstream 10000 false Chr05: 50841833-50851832 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122189508 5267 Panicoideae View MSA
124581923 5269 Grass View MSA
122044879 5273 Angiosperm View MSA
121344923 5274 Embryophyte View MSA
123425704 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.9       High
cufflinks 1.182       Low
cufflinks 1.797       Low
cufflinks 2.686        
cufflinks 2.693        
cufflinks 3.715       High
cufflinks 2.603        
cufflinks 1.511       Low
cufflinks 2.712        
cufflinks 2.959        
cufflinks 2.577        
cufflinks 2.961        
cufflinks 2.378        
cufflinks 2.563        
cufflinks 2.541        
cufflinks 1.62       Low
cufflinks 2.777        
cufflinks 2.973        
cufflinks 0.993       Low
cufflinks 2.925        
cufflinks 3.134        
cufflinks 3.282        
cufflinks 3.134        
cufflinks 3.077        
cufflinks 1.861        
cufflinks 1.106       Low
cufflinks 2.405        
cufflinks 2.635        
cufflinks 2.746        
cufflinks 2.873        

0 Strain