Gene : Sobic.001G444600 S. bicolor v3.1.1
Defline:  (1 of 1) PTHR37173:SF1 - HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN Genomic Order:  4663
Name:  ? Sobic.001G444600 Secondary Identifier:  ? PAC:37944520
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Sobic.001G444600 0.5kb upstream 0.5kb upstream 4760 true Chr01: 72155944-72160703 Sorghum bicolor
Sobic.001G444600 0.5kb upstream 0.5kb upstream 500 false Chr01: 72155944-72156443 Sorghum bicolor
Sobic.001G444600 0.5kb downstream 0.5kb downstream 4760 true Chr01: 72156444-72161203 Sorghum bicolor
Sobic.001G444600 0.5kb downstream 0.5kb downstream 500 false Chr01: 72160704-72161203 Sorghum bicolor
Sobic.001G444600 1.0kb upstream 1.0kb upstream 5260 true Chr01: 72155444-72160703 Sorghum bicolor
Sobic.001G444600 1.0kb upstream 1.0kb upstream 1000 false Chr01: 72155444-72156443 Sorghum bicolor
Sobic.001G444600 1.0kb downstream 1.0kb downstream 5260 true Chr01: 72156444-72161703 Sorghum bicolor
Sobic.001G444600 1.0kb downstream 1.0kb downstream 1000 false Chr01: 72160704-72161703 Sorghum bicolor
Sobic.001G444600 2.0kb upstream 2.0kb upstream 6260 true Chr01: 72154444-72160703 Sorghum bicolor
Sobic.001G444600 2.0kb upstream 2.0kb upstream 2000 false Chr01: 72154444-72156443 Sorghum bicolor
Sobic.001G444600 2.0kb downstream 2.0kb downstream 6260 true Chr01: 72156444-72162703 Sorghum bicolor
Sobic.001G444600 2.0kb downstream 2.0kb downstream 2000 false Chr01: 72160704-72162703 Sorghum bicolor
Sobic.001G444600 5.0kb upstream 5.0kb upstream 9260 true Chr01: 72151444-72160703 Sorghum bicolor
Sobic.001G444600 5.0kb upstream 5.0kb upstream 5000 false Chr01: 72151444-72156443 Sorghum bicolor
Sobic.001G444600 5.0kb downstream 5.0kb downstream 9260 true Chr01: 72156444-72165703 Sorghum bicolor
Sobic.001G444600 5.0kb downstream 5.0kb downstream 5000 false Chr01: 72160704-72165703 Sorghum bicolor
Sobic.001G444600 10.0kb upstream 10.0kb upstream 14260 true Chr01: 72146444-72160703 Sorghum bicolor
Sobic.001G444600 10.0kb upstream 10.0kb upstream 10000 false Chr01: 72146444-72156443 Sorghum bicolor
Sobic.001G444600 10.0kb downstream 10.0kb downstream 14260 true Chr01: 72156444-72170703 Sorghum bicolor
Sobic.001G444600 10.0kb downstream 10.0kb downstream 10000 false Chr01: 72160704-72170703 Sorghum bicolor

5 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122193599 5267 Panicoideae View MSA
124586788 5269 Grass View MSA
122045095 5273 Angiosperm View MSA
121345714 5274 Embryophyte View MSA
123425917 5275 Viridiplantae View MSA

47 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.282       High
cufflinks 1.068        
cufflinks 1.022        
cufflinks 1.162        
cufflinks 2.445       High
cufflinks 2.051       High
cufflinks 1.2        
cufflinks 0.583       Low
cufflinks 1.293        
cufflinks 1.39        
cufflinks 0.954        
cufflinks 0.951        
cufflinks 1.02        
cufflinks 0.91        
cufflinks 1.747        
cufflinks 0.894        
cufflinks 1.209        
cufflinks 1.144        
cufflinks 0.55       Low
cufflinks 1.303        
cufflinks 3.99       High
cufflinks 0.898        
cufflinks 1.042        
cufflinks 0.838        
cufflinks 1.099        
cufflinks 0.673       Low
cufflinks 0.86        
cufflinks 1.643        
cufflinks 0.647       Low
cufflinks 2.245       High

0 Strain